AMCG00013298


Basic Information

Item Value
gene id AMCG00013298
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27385665 ~ 27415286 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013298
ATGGCAATTAGCGGCGTCTTTGCGGAGCCCCTGCCCAGGAGCATCTTTAGGAAGTCCGCTGCCATGCTGTGCTCTCTGCTCCTGTCTCTCTACCTGCTCTACTGCCTGAGCGACCGCTGCAGCACCGCGCCGAGCCCGGTCAGGGCGTCCGACCCGGCGGCGGGACACCTCGCCTCGGACCTGCGAGACTGGCCGGCGGTGAGGAGGAAACGGCTCCTGCAGAAGATCACGCGAACCCCCCCGGACGAGATGGATCTGAGGTCCGACCTGCGGCTCTCCAGCTCCGGGAACTTCGGCTCTCTGGCGGGGCTGGCGCGGCTGTCCGCCGCCGGCACCGGGAGCTCAGGTGGGAGTAAACTGAGCCAGCTGGGCGAGGGGAGCAAGAAGCTGCCGCAGGCCATCATCATCGGGGTGAAGAAGGGAGGCACCCGCGCCCTGCTCGAGTTCCTCCGGGTGCATCCCGACATCAGGGCCGTGGGAGCCGAGCCGCACTTCTTCGACAGGAACTACGACAACGGGCTGGACTGGTAcaggtaa
>TU54169
GTCGGCGCGGCGCGAGCGGGGAGCACCTGAGCGGCGCAGCGCTGAAAGCATCACACCGGACAGTCACATAGCTCAACACACAGTCAGCACTGTTACTGTGCACTGCCTGCTATTAGCCTTCATATTAACATCTACTATTCGCTTGCATGCTTCCTATTGAGTTATTACACAGGTAATAATACATTCACTGAGCATTCagtttcaataataatatataataattagtaCAGCCTAATCATCTATCATGTAAGAAGTTTCAGATATTATTAAATAGGagtgcatgttatttttaaaacacaacccTGTCAACACTTCTATGCTCTATAGCCGATGCAGTTTTCTGAGATATTAAATTCTCCTTGATGGCAAGACCCCAGCATGTCTGCCTAGCATGGCTGTGGCTCCTGAACACGCATTTATGGCACTATGGCAATTAGCGGCGTCTTTGCGGAGCCCCTGCCCAGGAGCATCTTTAGGAAGTCCGCTGCCATGCTGTGCTCTCTGCTCCTGTCTCTCTACCTGCTCTACTGCCTGAGCGACCGCTGCAGCACCGCGCCGAGCCCGGTCAGGGCGTCCGACCCGGCGGCGGGACACCTCGCCTCGGACCTGCGAGACTGGCCGGCGGTGAGGAGGAAACGGCTCCTGCAGAAGATCACGCGAACCCCCCCGGACGAGATGGATCTGAGGTCCGACCTGCGGCTCTCCAGCTCCGGGAACTTCGGCTCTCTGGCGGGGCTGGCGCGGCTGTCCGCCGCCGGCACCGGGAGCTCAGGTGGGAGTAAACTGAGCCAGCTGGGCGAGGGGAGCAAGAAGCTGCCGCAGGCCATCATCATCGGGGTGAAGAAGGGAGGCACCCGCGCCCTGCTCGAGTTCCTCCGGGTGCATCCCGACATCAGGGCCGTGGGAGCCGAGCCGCACTTCTTCGACAGGAACTACGACAACGGGCTGGACTGGTAcagGGACCTGATGCCCAAGACCCTGGAGGGCNNNNN

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013298 False 537 mRNA 0.67 1 27386091 27386627
TU54169 True 992 TUCP 0.56 2 27385665 27415286

Neighbor

gene id symbol gene type direction distance location
AMCG00013288 NA coding upstream 245066 27130164 ~ 27140599 (+)
AMCG00013287 tekt3,LOC107753251 coding upstream 268228 27111850 ~ 27117437 (+)
AMCG00013283 LOC108429730 coding upstream 326744 27036615 ~ 27058921 (+)
AMCG00013291 NA coding upstream 386985 26981675 ~ 26998680 (+)
AMCG00013289 cep131 coding upstream 404296 26963688 ~ 26981369 (+)
AMCG00013296 NA coding downstream 133519 27548805 ~ 27569295 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding downstream 177489 27592775 ~ 27609468 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding downstream 396407 27811693 ~ 27814163 (+)
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding downstream 459207 27874493 ~ 27875484 (+)
AMCG00013311 NA coding downstream 521127 27936413 ~ 27946835 (+)
G43402 NA non-coding upstream 375014 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 455412 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 600104 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1541071 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 1764426 25620937 ~ 25621239 (+)
G43673 NA non-coding downstream 974403 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1322837 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 1734692 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 1741413 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 1761765 29177051 ~ 29178266 (+)
G43434 NA other upstream 226944 27158302 ~ 27158721 (+)
AMCG00013281 NA other upstream 462526 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 480702 26897509 ~ 26904963 (+)
G43309 NA other upstream 574050 26808164 ~ 26811615 (+)
G43263 NA other upstream 845616 26524826 ~ 26540049 (+)
G43476 NA other downstream 173853 27589139 ~ 27590818 (+)
AMCG00013310 NA other downstream 513422 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 592228 28007514 ~ 28072799 (+)
G43682 NA other downstream 1068987 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 1261256 28676542 ~ 28686138 (+)

Expression


Co-expression Network