AMCG00013299 (ndel1,LOC108432229,LOC104940291,LOC107672491)


Basic Information

Item Value
gene id AMCG00013299
gene name ndel1,LOC108432229,LOC104940291,LOC107672491
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27592775 ~ 27609468 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013299
TGCTATGGTCCTACATCTTTCCTATTCATTTTCTGTCAACAGACAAATGTATACGGGGGGGCGgggtattatttttaaatacaatgaatgCATTAGTGCTGTAACCATAGACATTCCCGGCAATGCCGCCTGTACTAGCCTATAGGAAACCATGAGGCGCACAACCCCGACGCCCAGGAAGCGTGTGATTCCAGCCACTCTGCGCTTGCGTCATCGCCACAGTCACTGCGTCACTGCGTCACTGCGTCAGAGACGTAACGACGCGCCCCCGCGTGCGTGCGTGAGTGCGTGCGGAAGCCTGTGACCGCGGAGTCGGGCTGGAGCTTCGGATCTCAAACAGCGCGGCGAGCGGCGGGGCAGCACCGACACCCGGACGGATACACAGCGACCGCGGCTGGCAATGCTCAGgTTTGTTTACCATGGACACAGAGATGATACCAAAATTCTCTTCCAAAGACGAGGAAATTGATTACTGGAAGTCGCGCAGcttgaaatacaaaaagagTTACCAGGAAGCCCACGAGGAGCTGCTGGAGTTCCAGGAAGGCAGCCGTGAACTGGAAGCCGAGTTGGAGGCGCAGCTGGGCCAGGCCGAGCACCGCATCCGAGACCTGCACGCAGACAACCAAAGACTGAGAAACGAGGTGGAGACACTAAAGGAAAAGCTGGAGCAGCAGTACTCCCAGAGCTACAAGCAGATCTCCATGCTCGAGGATGACCTGGGGCAGACGAGGGCCATCAAAGAACAGCTTCACAAGTACGTGAGGGAGCTGGAGCAAGCCAATGATGACCTGGAGCGAGCCAAGAGGGCAACGATCGTGTCTCTAGAAGACTTCGAGCAGAGACTCAACCAGGCCATTGAGAGGAACGCCTTCTTAGAAAGTGAACTGGATGAGAAAGAGTCGCTCTTGGTGTCGGTCCAGAGATTAAAGGATGAAGCCAGGGACCTGCGCCAGGAACTGGCCGTGCGGGAGAGACAGACGGACGTGACGAGGATGTCCGCGCCCAGCTCGCCCACGCTGGACAATGACAAGATGGACTCTGCGGTCCAGGCGTCCCTCTCATTGCCAGCCACCCCCATAGGGAAGAGCATGGACAACGGCTTCAGCAGCCCCAAAGTAATACCAAATGGATGTGGCAACTCACCCTTAACCCCGTCGGCGAGAATATCAGCTCTTAACATCGTTGGGGATCTTCTAAGGAAAGTAGGGGCATTAGAGTCCAAGCTAGCAGCCTGCAGGAACTTTGCCAAGGACCAGGCATCAAGGAAGACCTACTCGTCAGGAAACAGCAACCTGATCAACAGCAACAGCACGAAGTTCTCCCACTCGCTGCAAACGACATACTTCGATAAAGCGGCAGTGAACGGACTCGACCCCGGGTCCTTGGCAGGAATCGGGTCACCGCGCTCTGCGTCTCCACCTGGCATGCTGCCCCTTAGCGTCTGACGAAGCCATACCCTCACCGGACCCCCACCTTACTGACGGAACAAGGGAACAGGCTGAGCTTTGAAGGACATGTTTCACTTACTGAGCTGCAGCACTAAAAGACTTAAAGCATCGCTCTCCTGACCACAAGCTCTTCAGactccctttttttttccagttcatCATTGTTCCTTCCACTATCCGTCTGTCCTCGCTAACGGTCTCATCCTTTTGTTTCCCAGCGAGCTGCGTCCTCGAGCGACGTCACAGTTCTGCTCGCCGTTACAATCATAACCGTTTTATTCCCAACGATGCTCCTCCGCGGACTgtagcatttgttttacatgaacctgaaaagaaaaaaatatttatatttttgaatactatgttgtaaaaaacaaaaaacaaaaaaaaagaaaacaaaaaaagggatTTCATTTAAGCACTTGATTTCGTTtcgttttgtatttgtactgtagTTTGTTGGGAAGGGAGCGCGGAGATGAAGAGGAGGTCCTGATCACTTCAAGTTTGGATGATTTtgagcacattttattttttcacggTTGCTGCTAAGGAAACTTGCATTGAGATGCAGATGTTGCTTTCCCCTCTTTTTATTCAAAAACAGCGGGACACTAGAAACACCAAAAACAGAAGGTACAAAAGTTTGATTCAGATTCTCCCGGTGTCTAGTGACCTGCAAAGCATTACCACGTGGatttgcacttttttgttttaggttttgatGAACAGAACTGTGGTTTCTGGCCTAAGttacaaccaaacaaacatgtttttttcccttctctttgTGTATTTAGTGTAACAGCCAATTCTACAAATAAAGTGAcggttacatttaaaaaccgtGCTTGAATTGTAGCTCAATATGCTTGTGACGGACTGATATACATGTAGTTCATTAGGTCCTGAAACCCATTCAGGACAAACCAAATGACATCGAGGAGGAGAAGAGGTTTGTCGCCCAGCCGCCCACCGTCTCACCCCTTTGGAATTTGATTGTTAAAACAGTATTGGAAACCCTTGACTGTAATATAGTCCGTTCTAATTTTCAGtgtcatttaataaatattaatgtgctGTGACTAATTCTTTGCCACTTCTACACTTTGTGTTAATGAGAACTTTGTAATTGTGTAAATCTCTTGTTTTAATGTGCCTCTCGTTAGGGTGGGTTTGAAattcaccttttttttctttgtgtgtgaaaaatCACAGTCCTCTCTGTTTGGTTACTTAAAGGTTTACAGTGGAAGCATTTTAGACGACGTACTTGTGTCAATTGGTTGATCTGAAACTAATTTGAAGCACCGGAGTCATTCCCAATTttgattttacacattttgttcattCACACAAGATTGCTGTTGATATGTTTCAGTGTATATAGGTTTATAAGCATAGTAACTTTGCCTAagatgtttgtgtatatgtgtgtaatatatatatatatatatatatacaccaactTGGGCTTTctggctttatttattcagattcCTTATATGGCATGTGTTGAAATGAGAGTGTATTATAATACAGTTGTAACAGATCATATATCATAATGTAGAATCGGCTGTCTAATCTGTTTAAAACctgacaataaaaaacatttttgaaagtt

Function

symbol description
ndel1 Enables identical protein binding activity. Involved in chromosome segregation; positive regulation of GTPase activity; and regulation of intracellular protein transport. Located in kinetochore. Biomarker of schizophrenia.

NR:

description
PREDICTED: nuclear distribution protein nudE-like 1-B

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16739 NDEL1; nuclear distribution protein NudE-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013299 True 3075 mRNA 0.46 9 27592775 27609468

Neighbor

gene id symbol gene type direction distance location
AMCG00013296 NA coding upstream 23480 27548805 ~ 27569295 (+)
AMCG00013288 NA coding upstream 452176 27130164 ~ 27140599 (+)
AMCG00013287 tekt3,LOC107753251 coding upstream 475338 27111850 ~ 27117437 (+)
AMCG00013283 LOC108429730 coding upstream 533854 27036615 ~ 27058921 (+)
AMCG00013291 NA coding upstream 594095 26981675 ~ 26998680 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding downstream 202225 27811693 ~ 27814163 (+)
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding downstream 265025 27874493 ~ 27875484 (+)
AMCG00013311 NA coding downstream 326945 27936413 ~ 27946835 (+)
AMCG00013312 NA coding downstream 342915 27952383 ~ 27953343 (+)
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding downstream 551862 28161330 ~ 28166776 (+)
G43438 NA non-coding upstream 174988 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 582124 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 662522 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 807214 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1748181 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 780221 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1128655 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 1540510 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 1547231 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 1567583 29177051 ~ 29178266 (+)
G43476 NA other upstream 1957 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 177489 27385665 ~ 27415286 (+)
G43434 NA other upstream 434054 27158302 ~ 27158721 (+)
AMCG00013281 NA other upstream 669636 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 687812 26897509 ~ 26904963 (+)
AMCG00013310 NA other downstream 319240 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 398046 28007514 ~ 28072799 (+)
G43682 NA other downstream 874805 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 1067074 28676542 ~ 28686138 (+)
G43802 NA other downstream 1494821 29104289 ~ 29104577 (+)

Expression


Co-expression Network