AMCG00013300


Basic Information

Item Value
gene id AMCG00013300
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27572915 ~ 27581176 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013300
AGCAGACCCAACCCACTGGACCTCTGTCCTCCAACACAGATCAGCTGCCTAGACACCGTGGATGTACAGTAAACTGAAAACCTTTTGTTCGGCGCTTTCCTCTGGCAGACAAACTAAAAGTTAGTTGTGCTACCATTCTATCCTGTCTTACTGAGTGTTTTATTGCACCAGGGGACCTTTGAGTCTCTAGGATATGGTACGAATGCTGTAACCAGTGTTACAAAGCAAGCCCCGGCTATACACAAGCTAGTCCTTGCCTAGTAAACCCCAGGGCCACACATGGAGGCTGGTGAGAGAGGCAAGAAAGCCAGCAGCTCCCCCGTCGAAAAAATAGGAACTAGTTTGTTTCATCGCCTTCTGGACAGGAGAATGCTTCTGAATCCCAAGGAAGAGATGAAGTTCCTGTTACATCGGTTGATCTATGTGGCGTACATTTCAACTGAGTTGGCAGATAAGAGGGACCTGGGGGGTTACTATGAGAGACTTTTTCAGAACCTCCAGCGGCGTTACCAAGGAGACGGAATCTCCGgactcctcctcctctaccCCTCCTATGTTGTTCACATGATTGAGTCCTCCAGCGACATTCTCTTCTCTGTCCTCCGAGACCTGAGGAGCATGCAGGAGCACGGACACAGGGTCCTGCTGGTGGATCCCAGAATCTTAATTATGTCACATGACATCCCAAATAGGCTTTTCCAGCAGTGGAGCTATGAAGTCCTCAACCTGCCAGCCAACACCCTGACTGACAGATCCCACCGAGAGCCCACGCTCACACTGGTCAGCGAGTCCCTGACCCGGCTCCTCAAACTGGGAACCCACCTCCTCAAGTGTCCCAAGAGCTCTAAAGCCTCCCAGGACAACCTTGTTGAGAAAGTTCCAGAGTTACTCCTTCCTCAGGACACCATCGGGGACctcctggagagagaggagcttCTAACCCCACACAGATACCTGGAGGCTTACGACTCTCCCCTGAACATTGTCATGGATTCTGGTCATGTGTTTGGAAGCGCCAACCCCACCACAGTGTAGGCTGTGGGCAGCAGAACTTGTCTGGCCTCCACCAGGACACTTCCAGCCCATATGAACTTGACACATGATACTCATGTGACAGTGCTTTTGATTGTCTTTCACCATGTACACACTCATAAACAGGCAAAAGCATCTGtaaatcataagaacataagaaagtttaaaaacaagaggaggccattcgacccatcgtgctcgtttggtgtccattaataaccgagtgatccaaggatcctatccagtctgactttaaatgttcccaaattttcagcttctaccacatcgttggggagtttgttccagattgtgacgactctctgtgtgaaatcCTCTCAATCTCACTCGTTACTGCTGTGTGTGGTCTGCCTGAGGCATCTGACTGTCCTACAGCAGCACCCTGTGGAGAAACGGGGCACCACCAGCtctgtcaaataaaaacacactttaaaaacagttcCACCCAAACAAACAGCCCAGAACACAAAAACGACCATTTGGATGACCCTACTCAAGCATACACCCAAGACTCACATTTTTGAGACTTAAACACCAGCCACTGGCAGCTAAAATCGTTAAAAACGTAGACTTTTAATTGGTTTTGACATTCTGTTGAGCAGGATTGTTGGAGAATCTCACAGTACAGACTGTTGGACCGGTGGGAAGCAGACAAGGAGTAGGGAAGCATGAACCGGGAGTGTGGGGGGTGAAGGGGACATGTCCATAGTGATTGACCAATTCTCATCTCAACGCTTCATAAACCCTCAGGCATCCTACTGCCCATGAAAGATGGTGAcattctctctgtcttttttgcCTCTGCTTGTTGTCAATAaccatataatttatttctgaaaataataataatcatgattaaAACATCCTAGACATTCTGAGTATGCTCCACAGGGTCACAGCATTTCTTGGTACACCAGGTGATCCGTGCTTCATTCACGAAGGATGAATTCGGTCAGGTTGGCACTCCTGTTTCCCAGCACAGAGAGATCTGTCCGTCCTGTAGGGCCAAATGACTGAGGAATTGTATTTGTCAGCGAAACAGGGTCCAGTTACCACCTACAGCATCGTGTGGGCTTCTGGACATAGTTTTATATAGTGTGTTTTGCCTGACAGAAATACTCAGTTGATAATCTTCCTGGCagcaaatgaataaaaattgaaaatcaaatcaaataaatcaacaggTACCTGGGTGGCACATCAAATCAGGATTTGCCATGAATTGTCTAACTGCTTATGGATGTCAAAGGCTTGGGGCGGCCGTATAACTCCCAGgtgtgttgaaatgtgtttttgttcctgATTCTTGGCACATGTTTGACCttcttattaataaaacattgaattacATGAATTACACTGAAATCATTTCCCTTTACTTTGATCACTttgaactttgtttttatttcccacaCTTGTGTTCATATTGTAATTTGTCAATGAAAGTAGGTGTTCACTTCTTTGTAGCCGAACAGAAATGAAGTAATGCATTTAGTTGATTACAGCGATGGCAGCAGCATTACTTCAAATGCCTACAATGATCTTAATTCTTAATTCAATATTGTCATCCAGCTGAAATTTCAAGCATGACAGGACGGTCCCCAAGTCTGATCATAAGCAACAGAGACACTTCCGTGGTACATTATGaatgaaataatgcatttgtcCCTGACCACATGGTACACCACAGCTTGGAGACACGTATATCCCACAGTGTGGTCATcagatgtacatttatataatattcagCAATACCATGTCTGGCAAACGCAACTGCAGTGAAGATTTGCAAACAGTACAATGCATATGCAAGTTGAAAACTGAGATCTTAGCATCTTAAAGgttgtgctaaaaacaaaacaaaaaataataatttaaatttgaaatgctCGAATTACAAATTGTTGCTCTCTTCTGGGAATACTCTTTTGTCAGTATATACAATGCCTCTTATAAAGGTCATGTCTTTTCATATAACAGGATAAACGTAACGATAATTACAGACAATGGAGGTACAGACACAACTGATCATTCACCTTGTTCACTTCCACGACCAAAAGAACTAAACAGAGACACGTTTCATCTTCATCATTATTACTTGTACAACATCCCTGTTGATTTTTTCAGATTTCCTTGTTATTGAGTGCCTTCGGTGGCGCCGCAAACCAGTCCTGCTCTTCGCAGTATTTGTACTCGAGTAGGAATGATCTACCACCTCAAACCTCGATTGAAGTTTGAATGCGATTTTCAAGACGGCTTTTATAGCTGCAGACTGGTGCGGTTTGTGGCCTAATTTCATAATTGCACTTTTATTCTGATATGTGACTTTTATTCAAATGAAACGCAAATGCTTTTAGTTCAGCACAGTCTGTTTGCTTGCATTGAACTTTATTGCttatttaaatgacagaaaGTTTACATTGCTGGACGTGAATGACTTATTCCAGTAGTTCAGCTTCTGtgttctaattatatatatatatatatatatatatatataaaaagaaaagccgATGACCAAAACTAGTGCTTGTAATGTGGACCTTCGCTTTCTCACCAATGGAAAAGTCAGGCTTCTACTGTATGTCTGTTtagtctatttaaaaaatggatTCATAAGCAACAATAATTTCTCTTAGGCAAACAACTAAAAGGCATCACTTAACATTTGTCATGATGTTAATGCTGAAGAAGGGCTACTGTCACCTTAAAACAATGCCAGATATTACTAATCAAAGCTACACAGACACATAATGCACTATCACTGTATTTCTCAGTCTCGACACTCATGAAATCCGAAGTGTCTGTTCGGCAAGTCCTACTTCGAGCTTTTATCAAGTGTCTTTTTCCTCATTCGTATTTTTGCTGTTGCTAACTGTGCAAAAGCTAGAGTATCATACTGCATCTGTCAATGTGTGAGTCTGGTGATATCTGTGGGGGGACAAAATGAACACcaccttttatatatatatctttttttttcatgtatatatatacacatatctaTGTACAGCTTCTTGTATTTACAGTTGAATTGTGGTAACAGGTAAGTTGGATATTTAGCACTTGAAATTAAGAGTAAAGGAGCAGCATTATAACATCCAGGCAGTGCATATGGATCCACAACTTTCTTTTATGAAAATATCTCTGATAAATACGCATAAAACCACTATCTATACTACTGTAAGGAAAGCCCTGTCATGAGATGTGAGCGCTGCGGTGTTTTATTCCTGCTCCCCTGCAGCAATCCGGCTTCGTCTCAATGTCCGCCAGGTGAGAAACAGAGGAATTCACACGAGCCACCTCTGAACACAACGTGCATCGCTTCTCTTCAGTACACGggcctttgttttgttttcttcaaatttaaaatcatgtggtttgtttttaatggcctTATACATCTCATGACATTCCCAAGAAATCTGACACCGTCATCTACTCGTACGTTTACTTCAGCTGGCCATCCAAGGAAGCAAGAGGCCGATTCTGATTCTGAACCACAGCAACTTtcacgtaaaaaaaaaaaaaggacccATATTTTTCCAGTGATACAAAACCACACAGCGTTAGCAGCTGTCGGGACTGAATAATACCGAAGGGTTAATATCTACAGAGTTCAGCACTGTCATGTACGCAGGATGAGAAAGTGCAGCATCTCTCCTTTCccatgcaattaaaacacacgTAGCAAAGATCCGCTGGTGGAGGTCGTCAAAATGTGAGACGGTTTCGTGGACAACGGTTCCCTCTTTTGATCCTAAGGAAAGGGTTGTATTTGtgcacagagaggcagagactaGAAGCCTAAAGTGCTTAAAAGCTCAAAGTACACTTCACCCCAAAGGGAGCGAATCCATCATTACATTCATCATCAGAAACCATTAACGGAAGTGCGGTGCAATTAAGAGGCAGCTTGTAAAGCCTGCTGGTCCAGTTTTTCCTGtccatttttttcaaatttctaTTTGGTGTGagcaagaaacaaaccaaaacaatcacAAACTAAATTCTCGCTCTTAGGTCTCCGCTTGAACGGTTTTAATGACTCTGAGGGAAGAGGAGCCAATTGCAATCAGAAGAAGGAGACGAGGCCAGTGTCAAATCAGAAACAGGGCACCGTCAATGATCCGAGCACCGTGCCACTGGTATGATTCGCGCACAAGTGTTTAACGCACAACCCCGGAGAAGAGAAGAATGCTGCACTTTCGTATTCTGAGCATCACAGTGTGAGATATGCCCCGAGCTTTTCCCCAAATCATCGACGTCATTGTTGATGCCAGTCACTGATTCGCCCTTTCATTAGGCACCAGCAGTGGACAAGCACAGAAACAACCCCATCGAACAGGTTACGGACAAATATAAAGGCAGAAGTTGCAATTAATCGGATAAggcaaagaaagacaaaaacaaaaaaataaacaaaaacaacaacaacgtaaaaaataataaaataacatgccaCGATTGAAAAAAGTGTTCATTTCCATATCTGAAGTGTCTTTTTAGATTGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013300 True 5566 mRNA 0.42 8 27572915 27581176

Neighbor

gene id symbol gene type direction distance location
AMCG00013297 NA coding downstream 64847 27498675 ~ 27508068 (-)
AMCG00013293 NA coding downstream 233605 27336290 ~ 27339310 (-)
AMCG00013294 LOC106589628,LOC102791232,LOC102301473,LOC101472949,LOC100695060,LOC101161443 coding downstream 265060 27299827 ~ 27307855 (-)
AMCG00013292 NA coding downstream 413575 27145647 ~ 27159340 (-)
AMCG00013280 NA coding downstream 571458 26999574 ~ 27001457 (-)
AMCG00013303 NA coding upstream 8915 27590091 ~ 27590711 (-)
AMCG00013302 myh10,LOC108442176,LOC108272528,LOC107659961 coding upstream 37597 27618773 ~ 27651553 (-)
AMCG00013301 myh10,LOC108272528,LOC107551888 coding upstream 91202 27672378 ~ 27680500 (-)
AMCG00013304 NA coding upstream 106689 27687865 ~ 27707372 (-)
AMCG00013309 NA coding upstream 162862 27744038 ~ 27745915 (-)
G43435 NA non-coding downstream 414186 27158301 ~ 27158729 (-)
G43425 NA non-coding downstream 445927 27126780 ~ 27126988 (-)
G43417 NA non-coding downstream 513673 27055552 ~ 27059242 (-)
G43412 NA non-coding downstream 523073 27049568 ~ 27049842 (-)
G43410 NA non-coding downstream 526352 27046361 ~ 27046563 (-)
G43518 NA non-coding upstream 132863 27714039 ~ 27717043 (-)
G43590 NA non-coding upstream 384836 27966012 ~ 27966233 (-)
G43592 LOC105901958,LOC107704008 non-coding upstream 479668 28060844 ~ 28061169 (-)
G43593 NA non-coding upstream 481073 28062249 ~ 28062453 (-)
G43626 NA non-coding upstream 648234 28229410 ~ 28234706 (-)
G43473 NA other downstream 3764 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 279842 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1015591 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1088501 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 1781156 25786143 ~ 25791759 (-)
G43594 NA other upstream 487037 28068213 ~ 28072787 (-)
G43684 NA other upstream 886136 28467312 ~ 28467906 (-)
G43869 NA other upstream 1672220 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 2345207 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 2459029 30040205 ~ 30061634 (-)

Expression


Co-expression Network