AMCG00013308 (LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279)


Basic Information

Item Value
gene id AMCG00013308
gene name LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27874493 ~ 27875484 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013308
ATGTACATAGCGGGCGCTGATTCCCTTGGCTGGGAAATCTATGGCAACTGTTGCCGTGATAATGAATATGCTGGTCTACAAAAcaaggagaggtcagaggtcgtGGCTGGAGGAAGGAAAGGGAAGTGTGGGGAGGACAGCGCAGCGGTGCAGGTGCACATCCTAAAGGCGGACAAGGCCGGGGAGTGGTGGAAGTTCACGGTGAACATCATCTCAGTGTACAAGCAAGGCGAGAACCGCATCCGCCGCGGGGACCAGTTCCTGTGGGTGCGCGCCAAGGACGTGGCCTGCAAGTGTCCCAAGATCAAGCCCGGGAAAAAATACCTGCTGCTGGGCAACGATGACGACTCCCCGGACCAGAGCGGGGTGGTGGCGGACAAGGGCAGCCTGGTGATCCAGTGGAGGGACACGTGGGCCCGGCGGCTCAGGAAGTTCCAGCAGAGGGAGAAGAAGGGCAAATGCAAGAAGGCCTAA

Function

NR:

description
PREDICTED: netrin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013308 True 474 mRNA 0.59 2 27874493 27875484

Neighbor

gene id symbol gene type direction distance location
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding upstream 60330 27811693 ~ 27814163 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding upstream 265025 27592775 ~ 27609468 (+)
AMCG00013296 NA coding upstream 305198 27548805 ~ 27569295 (+)
AMCG00013288 NA coding upstream 733894 27130164 ~ 27140599 (+)
AMCG00013287 tekt3,LOC107753251 coding upstream 757056 27111850 ~ 27117437 (+)
AMCG00013311 NA coding downstream 60929 27936413 ~ 27946835 (+)
AMCG00013312 NA coding downstream 76899 27952383 ~ 27953343 (+)
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding downstream 285846 28161330 ~ 28166776 (+)
AMCG00013315 NA coding downstream 297267 28172751 ~ 28179801 (+)
AMCG00013321 mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710 coding downstream 314951 28190435 ~ 28196943 (+)
G43438 NA non-coding upstream 456706 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 863842 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 944240 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1088932 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2029899 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 514205 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 862639 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 1274494 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 1281215 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 1301567 29177051 ~ 29178266 (+)
G43476 NA other upstream 283675 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 459207 27385665 ~ 27415286 (+)
G43434 NA other upstream 715772 27158302 ~ 27158721 (+)
AMCG00013281 NA other upstream 951354 26892596 ~ 26923139 (+)
AMCG00013310 NA other downstream 53224 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 132030 28007514 ~ 28072799 (+)
G43682 NA other downstream 608789 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 801058 28676542 ~ 28686138 (+)
G43802 NA other downstream 1228805 29104289 ~ 29104577 (+)

Expression


Co-expression Network