AMCG00013310


Basic Information

Item Value
gene id AMCG00013310
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27928708 ~ 27935938 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013310
ATGCTCCATGTTCCCCGTAAACACGATATTTCCAGCGGCATGGACCTAGACATCCCTCAGATAGACATTCTGAAAATAGACGAGGAGCTTCCAGACCTCTCAAGTTCTAGAAGACCAAGATCACAATCCTTCTATAACAGCAAACATGGGAAAAACCTTGAAGAAGACGAAGTTTCAGAGCCGGATTCGAGTAGGCCCCGGTCAAAGTCCTTCTACACTTCTGAGACATTACAACGCTATCACCTAGGAGCTTTCAGCAGGTCAAACGCTTTGAAACCTCgaacattttctttcctgaatGCTGATGGTAAACTGTCTCGGTTAAATCTGAAGAGGTCCAAGACAGACCCCAGCAGCAAGAGCAATGCATCAAAAGATCTTGAGGATAAGACAACATATGCAAGGATAAAAAAGTGCTACATGATAAATGGCCCTGATAGAGCACCCTTCCCTCACCTTTGTTTTCTCCTAGGAAAGAATGCATTCAATAATCCAATGTTGACCATATCTGAAGCAGATAACCGGGAGAAGAACTTGTCCCCGGAGATGGAATACGGACAGTTTGTGGACTGGGTGAAGATCGACCCTGTCTCTGCAATGATCTACCAGAAGATCCTGAAAAGCGATCATAAGCAGCTGAAGGGCATGGCCAGGGCGGGCTGCTGGTCCCGGACCCACACTCTTAGGGCCAAGGCCTACCACCACATCATCCACAGCATCAACTGCAGGTCCATCACCCCAGACAGGGAGGTGTACCAGCAGCTGTCGGGGGAACTGTTTGGGGAGCACAAAGTGAGCACTCACCCTTTGCCAGACTATATGGGGGACAGTTTCATCCCCATATACTGTCTCAACAAGGCCGGCCTGAACTCGGTGAAGAAGATTCTTCTCTGCATCGGCAGCCATTTCCCAGACATCACGTTCTGCCCGGTCCTGCCTGCTCTGGTGTCCCTCCTGCTCCACTATAGTGTAGACGAAGCTGAGTGCTTTCACAGCATTTGCCGTCTCATTGCCTACAATGACCCGGCCAGGCACTTTTTGGACCAGACTTTCCTCAGCTACAGGGCTTCATGCATGACCTTCGGAGACCTGGCCAACAAGTTCTGCAACAGTGGACACAAGCTCATCACCACCTCCAACCAGAGCTTCTTTGATGCCTATTCGGACTGGATCACTTGGATCTTTGGTGGTGGGCTTCCCTTCGAGTATGCCACCCGGGTCCTGGATGTATACCTGCTGGAAGGCTACAAAGTGCTCTATCGAGTGGCCCTGACTCTGCTCGCTGAGTACAAGGTTGCTGTGGCCTCCAAGGCATCACACAACGGTGACATCAGTCTGGATATTAATAGCTTTCTGGAGAATATCACCCACCATATCACTGTGGACAAGCTGCTGGAGAAGGCCTTCAACATTCACCTGTCACAGAAAAAAATCGATCTCCTCCTGGCTGCCAACAAGAGCACCCTCATGCAAAAGGGCATCACTATCCATCAGAGGAGGCAGTCGGTGCACATCGCTGTAGATTTCGATAGCTTTGGCTCCAGCATTGTCACTGGGCAAGAGATGAGGATTGTCTGGTCCTGGATCCCAGAGCGCTTTGCCCTGCTTTATCCCATCATGCTGTTCAGCACCAGAGAACATGGGCGCAGCCTGTCATCGTTTTATTCCCATGTCGAGTGTTTCGAGCCAACTGTTCTGCTGATCCGAACGGAGGAGGGGGAGGTGTGCGGTGCATTCCTGTCTTCCGACTGGAGTGAGAGGAATAAACCAGGCAGCAGGGGCACCAGGCTTTTTTTTGGGACCGGggaatgctttgtttttactCTGCATCCAGACACCGAGCGATACGAGTGGGCCTTCCTCCACATGACGGACATCGCCAAAGAAGACCTCCCCCTTCTAACTCCCAAAGTTCCAGAGCAGCACCCCCTGTCAGCCTCCATGTTTATGGCTGGGGGCAAGGAGAGGATTATCATCGGCGGAGGTGGGGGGCAGGCTCTGTGCATCGAGGCAGACCTGCTCAACGGGCGGACAGAACGATGCGACACCTTCGAGAACTCTCCCCTCTGCAGAGAACACTTCAAAATCCAGTGCCTGGAAGTCTGGGGGATCCAAAGCTCGACCAAATTCACATCGGCTTCCAGCAAACAGTCTGTTGATTATATATAG
>TU54319
CCCCAGTGCTCACTGAGATGCCCCCCCCAAGTCTAACTCCCAAAGTTCCAGAGCAGCACCCCCTGTCAGCCTCCATGTTTATGGCTGGGGGCAAGGAGAGGATTATCATCGGCGGAGGTGGGGGGCAGGCTCTGTGCATCGAGGCAGACCTGCTCAACGGGCGGACAGAACGATGCGACACCTTCGAGAACTCTCCCCTCTGCAGAGAACACTTCAAAATCCAGTGCCTGGAAGTCTGGGGGATCCAAAGCTCGACCAAATTCACATCGGCTTCCAGCAAACAGTCTGTTGATTATATATAGACCAAGAATGAGGTTTTGCTTCTGCTTCACATgaattgttaaatatttgagTCATGCTAATACTGTATTTCCCTCTTATTTAATACTCTTAgcatataaaatatgttttacatttttcagataaAGAGATTCTTTATCACCCCCCAGGTGTAAAGTTGTATGTCAAAGCTTTTATTTCTGCaaggttttgtgtgttttgtggaaTATGTGCAACAACCAAAGTAAAAATATGTGATATCAAGTTACAATataactttataggaaaattattttaagaatgacatagtatatattattgaaattgttatactgcataaataaatacaaagggCATAATTTGTTCATTAGGTTCCTTTACAACAACTTTTAATGTCTGTAAATCTCGTCCAGGAATTATTATTGAACTACATGTGCATTGTTTCCTTCAGTAATGCCAGCTTCTAGCACtgtggttttattaatatttgattttatataaaaataaaaaacacccacaAAGGTGGTTTGGTTTTTCAGACAAAAGTTAAGTCACTAATAATTGTTCTCTCACAGATACAATGGATACAATGGTTTAAAAACCATTCATTATTCtgcatgtaatatataattataattataattagtagCAGTAGAAGTAGATTATTGTTcgtattattttatgattttaatggtTTGGGTACAGcgttttttaaatctgcttcTATTGACATGTGATGTTGAAATGTGATGTATATTGTAAGATATAATTATATGTGAATTTGAAGAAATGTTGTTCAGTGAACCTGGAGTAAAGgcaatatattgtattgatgtTTAGATGTATCGTGAGAAGTGCTCCCACAAAAAGTGCTTGAATTAaagtttttcctcttttctgttgtttcactCGGCTaatccaaaatgaaaataacctGGTATTTTGTAGTACT

Function

GO: NA

KEGG:

id description
K21841 TBC1D24; TBC1 domain family member 24

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013310 True 2169 mRNA 0.51 8 27928708 27935009
TU54319 False 1231 TUCP 0.35 2 27934074 27935938

Neighbor

gene id symbol gene type direction distance location
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding upstream 53224 27874493 ~ 27875484 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding upstream 114545 27811693 ~ 27814163 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding upstream 319240 27592775 ~ 27609468 (+)
AMCG00013296 NA coding upstream 359413 27548805 ~ 27569295 (+)
AMCG00013288 NA coding upstream 788109 27130164 ~ 27140599 (+)
AMCG00013311 NA coding downstream 475 27936413 ~ 27946835 (+)
AMCG00013312 NA coding downstream 16445 27952383 ~ 27953343 (+)
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding downstream 225392 28161330 ~ 28166776 (+)
AMCG00013315 NA coding downstream 236813 28172751 ~ 28179801 (+)
AMCG00013321 mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710 coding downstream 254497 28190435 ~ 28196943 (+)
G43438 NA non-coding upstream 510921 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 918057 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 998455 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1143147 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2084114 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 453751 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 802185 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 1214040 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 1220761 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 1241113 29177051 ~ 29178266 (+)
G43476 NA other upstream 337890 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 513422 27385665 ~ 27415286 (+)
G43434 NA other upstream 769987 27158302 ~ 27158721 (+)
AMCG00013281 NA other upstream 1005569 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 1023745 26897509 ~ 26904963 (+)
AMCG00013317 NA other downstream 71576 28007514 ~ 28072799 (+)
G43682 NA other downstream 548335 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 740604 28676542 ~ 28686138 (+)
G43802 NA other downstream 1168351 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1704685 29640623 ~ 29667051 (+)

Expression


Co-expression Network