AMCG00013311


Basic Information

Item Value
gene id AMCG00013311
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27936413 ~ 27946835 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013311
atgtctgcagACACGCAGGAGGTGCCTCAGCTGGAGCTGGAATCAGTCATTGGATTTAACGGACAGGTGTTTTCTGGCCTGATTGTCCACCCTGACCGGGAGCACATTATTTACCCCCTGGGATGCACAGTCATCATCAAGAGcctcaacaacaacaagcagGAATTTCTGCACGGACACACCAACAACGTGTCCTGTGTCACCGTGTCCCGGAGTGGGAAATATGCAGATGTGATCATCTGGGATTACGACAGGAAGGACATGTATGCCAGATTGCAGCTTCACAAGGCGAAAGTGGAAGCTCTAGCTTTTTCCCCAAATGACCTATATTTGGTGTCCCTTGGAGGCCAGGATGATGGCAGGCTGTGGCTTCTGGTTTGGGCCTCTCACTCCAGTGCCCCTGCCAGCTCTTTGATCCACTTCTCTCAAGGTTTTGACCTGGTTTTCATAGCATGGCCTTATGAGCATGCGATTCCAGAGGATGATAGTTTTTTCTACTGTGGAACAACGAGTGGAGATATCCTAAAAGTTAATTTCAGGACCAAACTTCTGAACTGCTGTGGCCCCGTGAAGGAGAAATTCAGCAAGGGAGTCAACGCTGTTCAGGtgctgaaaacaggagacatgcTGGTGGGCTCGGGGGACGGCAGCTTCTCTCTGTGCCGAGGAGCAAACTTCAAACCTGTCAAGAAAGTGCAGCTGGAAGGGGGCGTGACCTCGATCGCCTTGCGAGGGCAGGGGCACCAGTTCTTCGCGGGCACCGAATCTTCACAGATCTACCGCTTTAACTACACAGACTTTAAAGAGGAACTGGTCAGCACGGGTCACAACCACACCGTGAACGACATCGCCTTCCCCCTTGGCACATCTGACCTGTTTGCCACGTGCTCCAAGAACGACATCCGCGTGTGGCACACCGACACCTCCAGGGAGCTGCTCCGGATCTCGGTGCCCAACATGACGTGCCACGCCGTGGAGTTCATGAGCGACGGCAGGAGCATTATCAGCGccTGGAACGATGGGAAGATCCGAGTCTTTACCCCGGAAAGCGGTAAATTGATGTTGGTCATCAACAACGCCCACAGCATGGGTGTGACAGCCATCAGCGCCACCAGCGACTGTAAGAAGATCGTgagtggagggggagaggggcagGTGCGAGTTTGGGAGATCGGTAAAGACAGTCATCGCCTGGTTGAGGCCATGAAGGAGCACAAAGCCACAATCTCCTGTATAAAGATAAAGAGGAACAACCAGGAGTGCGTCACTGCCAGCTCTGATGGGACCTGCATCATCTGGGACCTGGTCCGGTTTGTGAGGAATCAGATGGTGCTGGCCAACACGCTGTTCAGATGCGTCTGCTACCATCCGGAAGAGTTTCAGATCATCACCAGCGGCACCGACAGGAAGATCGAATACTGGGAAGTGTTTGACGGCTCTGCTCTCAGAGAACTGGAGGGCTCTCTGTCTGGGTCCATTAACGGCTTGGAAATCTCCCAGGATGGCCATCACTTTATCACAGGTAGGGGTCGCAGGGCAGCAATACATCAATAA

Function

GO: NA

KEGG:

id description
K24728 CFAP52, WDR16; cilia- and flagella-associated protein 52

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013311 True 1554 mRNA 0.53 12 27936413 27946835

Neighbor

gene id symbol gene type direction distance location
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding upstream 60929 27874493 ~ 27875484 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding upstream 122250 27811693 ~ 27814163 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding upstream 326945 27592775 ~ 27609468 (+)
AMCG00013296 NA coding upstream 367118 27548805 ~ 27569295 (+)
AMCG00013288 NA coding upstream 795814 27130164 ~ 27140599 (+)
AMCG00013312 NA coding downstream 5548 27952383 ~ 27953343 (+)
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding downstream 214495 28161330 ~ 28166776 (+)
AMCG00013315 NA coding downstream 225916 28172751 ~ 28179801 (+)
AMCG00013321 mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710 coding downstream 243600 28190435 ~ 28196943 (+)
AMCG00013322 NA coding downstream 252974 28199809 ~ 28208595 (+)
G43438 NA non-coding upstream 518626 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 925762 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1006160 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1150852 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2091819 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 442854 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 791288 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 1203143 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 1209864 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 1230216 29177051 ~ 29178266 (+)
AMCG00013310 NA other upstream 475 27928708 ~ 27935938 (+)
G43476 NA other upstream 345595 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 521127 27385665 ~ 27415286 (+)
G43434 NA other upstream 777692 27158302 ~ 27158721 (+)
AMCG00013281 NA other upstream 1013274 26892596 ~ 26923139 (+)
AMCG00013317 NA other downstream 60679 28007514 ~ 28072799 (+)
G43682 NA other downstream 537438 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 729707 28676542 ~ 28686138 (+)
G43802 NA other downstream 1157454 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1693788 29640623 ~ 29667051 (+)

Expression


Co-expression Network