AMCG00013313 (stx8)


Basic Information

Item Value
gene id AMCG00013313
gene name stx8
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27917922 ~ 27927327 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013313
GTTTAGAACCACTGCGCTGGTGCATCTGTAGTCCTCCACTAGAGACAGGTTTGCCTATCTTGTCCCATCTTGAACGCCGTAGATGGTCATGTGACACAGGCACTAAAACAGGAAGTGGGGCATGTTCAGTAGTTTccagttaatgttttttttttttttttatgtattcttttagCTGCAAAAGAATCACCTTGAATAGTGTCATTCACAGCGGATAggtgataattattattacatcatGTCTCAGGATCCCTGGCTACAGAATTATGATGCCACTTGCCGCCTTGCTCAAGAAATTGCAGAAAATATCCACGAGAGGAACAGGcagcagaggagagaggagaacccTGCGAAGCTCAACATGACCCTCAGAGCGTCTCTGCAGAAGCTGAAGCAGCAGATCGGGCAGCTGAGGGAGTCTCTGCTCAGATCGACCTCCTCTCGCCGCATAATGCAATCGGAAGCAGACAGAAGACAGAATTTGGTGGATGACCTTGTCACTCGAGAGAAACAACTCAACGCAGCTTTTAAGAAGGATGGCAAAGAGTCTGAACCCTCCAGGTCCAGTCTCCTGACGGGAGGGATGGGCTCTGGAGACAAGGTGAACCCCTGGCTGATCAATGAACCCGAGGAGACCAGAGGCTTGGGCTTTGGGGAGattaagcagcagcagcaaaggATTATTGACGAACAAGATGCTGGCCTGGACGCCCTGGCGGTTGTCATCGGCCGGCAGAAACAGATGGGCCGGGAGATCGGGAACGAACTGGACGAGCAGAACGGTAAGAAGCGATTTCAAGACGAGGAGAGACGCTGACTGACCCACCGTCAACAAGCCGGATGAGCTAACAAGACGAGACGAGATGAAAATATAGATCTAAGCAATGGATTGATGGCTGCCGAGAAGTGGTCTGCAGAGCCCAAGCTGAAAAAGCCAGAGGAGGAGATTTAATTTGATCATGTGGCTTTGTGTATTCTTTTGCAGTCATTACACCAGGCAGGCATCTTCATTGCAGGGCCGTCATTTGGCCTGATTTCAGACAATCCCATTTGCCTGCCGAAACTAATGGGGCTGTCTGACTGAAGTATAATGGACTCTTCAACGTGCGCTTCGCGGATGCGGTTCTGGAATTGTATCCCATCCTCGATAATGGCATTTCCACAAATAACATTCGCTGAAGTCAGATTTCAGGGTATATGCCACTTGGAGGAGACTAGTTTGAATCATCACTGGGGATTCATTTATGGGAAACAGGCAGGCTGGGATTTGGGTTATTTGTTTTCGTCCAATTAGATCAGTAGTCCAACGGCGTTCTCTGGCACACACCTTTGCTAAACAATATGTCTGATACCACGACGATACTTCTGGTGACGGGTGCAAAGCAGACACCGACCAGAAAAGCAATTGATCCCTTTGTGTTAATCCTCAGCGTCCATCTTAATTGAGGGTGAGGTTGACACCTGTTCCACATCTGGTGTGAATCTGGTTTCCGCTGGGTTATTGTCCTGGAATCCATACAAACCTATACCACCAATATTTGGTTCACTTGAGGAAGTTTGCTTTGATCCCAGGTGCCAGGACAGTCCCCACAGTGCTGGAGTAGGGACTGTGGTAGGTGCTGTGTCTGACGGGGGGGAAAGTGGACACAATGTGAGCACAGCCTTGTCCTCCTCGCTCCTTCGACAGCAGGTCCTGCTAGGCTCTGTAACTTCGGGAGAGGAGATTGATGGGCCAACCGTTGGGAGAGGAGAGTGCAGGAGGCGGGCGCGGTGGACCATTCCCCGGGCAAGTAGACGTCTGCCGAGGTCAGGTGACATTCCAGGGGGATGTTCCAAGTCGTGGAGGAGGCGAGGGTGAAGACAGATTGGGCACTTTaggttttaaatgtgaaagaaTGCAGCTCCAAGTTCATTAGTTCCCTCTTGCTTTTCTTGGCGTTGTTGAGGTGCACCACAATGCCACAGCTCTGGAGGCCATATAATTACAGCCGGCTATTCCgctgaaatgtgcttttctttctctcccatGTGTGAATGCGATGACATGATTAGTGTTCTCCCCGAAGAGTCGGGGCGCTGCCTCGGGGTCAGTGTCTGCATCTGGCTGGGGAAAACATGTactgttttctttctaattagACCCTGAATTGTTTAACATCGTAATGAGCTATAGGATTCAGGCACTGTG

Function

symbol description
stx8 Enables SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of membrane. Orthologous to human STX8 (syntaxin 8).

NR:

description
PREDICTED: syntaxin-8

GO: NA

KEGG:

id description
K08501 STX8; syntaxin 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013313 True 2188 mRNA 0.49 6 27917922 27927327

Neighbor

gene id symbol gene type direction distance location
AMCG00013314 NA coding downstream 17033 27892338 ~ 27900889 (-)
AMCG00013306 NA coding downstream 129454 27774263 ~ 27788468 (-)
AMCG00013305 NA coding downstream 150694 27749632 ~ 27767228 (-)
AMCG00013309 NA coding downstream 172007 27744038 ~ 27745915 (-)
AMCG00013304 NA coding downstream 210550 27687865 ~ 27707372 (-)
AMCG00013318 NA coding upstream 147214 28074541 ~ 28078702 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding upstream 201341 28128668 ~ 28130132 (-)
AMCG00013325 LOC107724659,LOC107579769 coding upstream 269630 28196957 ~ 28199793 (-)
AMCG00013326 nup85,LOC106601803 coding upstream 283076 28210403 ~ 28218058 (-)
AMCG00013331 NA coding upstream 565619 28492946 ~ 28495999 (-)
G43518 NA non-coding downstream 200879 27714039 ~ 27717043 (-)
G43435 NA non-coding downstream 759193 27158301 ~ 27158729 (-)
G43425 NA non-coding downstream 790934 27126780 ~ 27126988 (-)
G43417 NA non-coding downstream 858680 27055552 ~ 27059242 (-)
G43412 NA non-coding downstream 868080 27049568 ~ 27049842 (-)
G43590 NA non-coding upstream 38685 27966012 ~ 27966233 (-)
G43592 LOC105901958,LOC107704008 non-coding upstream 133517 28060844 ~ 28061169 (-)
G43593 NA non-coding upstream 134922 28062249 ~ 28062453 (-)
G43626 NA non-coding upstream 302083 28229410 ~ 28234706 (-)
G43670 NA non-coding upstream 415950 28343277 ~ 28347474 (-)
G43473 NA other downstream 348771 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 624849 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1360598 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1433508 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 2126163 25786143 ~ 25791759 (-)
G43594 NA other upstream 140886 28068213 ~ 28072787 (-)
G43684 NA other upstream 539985 28467312 ~ 28467906 (-)
G43869 NA other upstream 1326069 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1999056 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 2112878 30040205 ~ 30061634 (-)

Expression


Co-expression Network