AMCG00013315


Basic Information

Item Value
gene id AMCG00013315
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28172751 ~ 28179801 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013315
GGAAAGTGGAAATGATAGCGTGAGTGATATGTAATGCAGTGTAGCATCAATGTATTACTAAATAACCGAGcgatgtgtttatttgtgtcttCGTCTGTGTAAGGGATTTTCTCACAGTTATTGTCTCGGTGCTTGTGCTTTCTTCAGCCATGCTGGTGTCGCTTCTGTCCTGAAGGCCAGGCAGTGATGGTGGGCTATGACCCCGGGGTGCGGGGGGACAAGCTGACCACGGGGGAGGTGGTGCAGGCCGGCTCGGCGGCAGGCATGGTGACCAGAGCCATCATCAGCCCCCTGGACCTGCAGATCGAGCAGGTGTCTGTGCGCTGTCGCCAGGCCCGGTACCAGGGACTGTGGCAGGCCACCCAGCGCATCTTCTCCGAGGAGGGCGTGCAGGCATTCTGGAAGGGCCATGTTCCCGCACAGCTGCTGTCAATCTGCTTTGGGGCGGTCCAGTTCGCCAGTTTCGAGTGCCTGACGGAGTTCGTGCACAAGGCCACTCCCTACAACAGCAGGACGGCGGGTGTGCACTTCGTGTGTGGGGGGCTGGCTGCCTGCTCCGCCACCGTGGCCTGCCAGCCGCTCGACACCCTGCGCACCCGCTTCGCCGCGCAGGGGGAGCCTAAGGTGTACCGTAATCTGAGGCACGCCGTGTCCACCATGTACCGCTCAGAGGGCGCCCTGACGTTCTACCGCGGCCTGACGCCCACTATGATCGCCGTCTTCCCCTATGCTGGCATGCAGTTCTTCTTCTACAACATCTTTAAGAAAGTCTACCTGTGGATTCTGCGGAGGGACGCCCACACCACAGATAACTTCGGTAACCTGGTGAGTGGCAGCTGCGCCGGGGTCATCAGCAAGACCCTCACCTACCCCTTCGATCTGTTCAAAAAGAGGCTGCAAGTGGGGGGATTCGAGGAGGCCAGGACACACTTTGGGAAGGTGCGGTCGTACCAGGGTCTGGCGGACTGTGTGCTGAGCATCGCGCAGGAGGAGGGTCTCCAGGGCTTCTTCAAGGGCCTGTCCCCCAGCCTGCTCAAAGCGGCTGTGTCCACCGGCTGCACCTTCTTCTGCTACGAGTTGTTCTGCAACATCCTGTTCGGCCTGCGGCGCAGAACAGAGCCCAAAGAGCAGAGCGGAGGAGGAACGAGGGACGTGTGAAGCGCACAAACCTCCACAGACTTGAAGTCAAATTGCCTTGATTTCCCTCCTCAATACTATAAACTGGACCACCTCTCCGCATCCTTTTGCGGCAGCACAGCGTCATCGTGACTCCGTGGCTTTGTCGTGCCAAGTTACTGACTCGTTCTGTTCATGAAAACCTCAAACACCGTAGGATCAGGGGAGTGTCAACCGGTCAAATCGGTTGGctgaatttcaaaatgtactgacaatattttttcattcttaagCTTTAAAGTCTGAGTTATCTTTCtagttatttagttagttatCCTCCATATAAAAGTGTGGTCACAATCttcggtggggggggggcttgaCTGGTTAAGTTATTTTCCGATGCACTGCACCCTGTACTGCATTAGAGACACCTCTAGTTTTCACATAGACCAACGTGTTTTagtgtgtatttaatgtgtgtgtccATGTTTGCCCAATAAGTGTATCACAGAGACTCCTGGTGTTCAACGGGGCAATGAGCGAGAACTTTGTTACTGAGTTCGTGTTTGATCTGCACAATCGCAGTGGCACTGAGCTGTCTTCCACAGACCTGTTGTCGTTTATAATGAAGAAGGGAGAGGTGTGCTGGAGAAGGATGGGACGGGAAGTTCTGAATTCTGAATTTCACTGTAGGCAGTACGGGGATGTGGggtttttgatttaaatgtactgtgtgCACGTGGTGGGGGGCTTGCAAGCTTATCTCTGAGGATGTTACACTAATTATGTGAGTTGAATATATCATTGTCTCTCTTGTCCACGAAACACACGGCGTGCTAGCACAGGATGTCACTTGTTCACATTTGAATGGCAGCTATGAGTTCAACCATCAcgtttaattcaaatgtaatgctttgtcGTATTAAGACTCTAAACTGCAGCAGCCGTCTCGAAGAGCACATATCGCCAAAGTATTTTTATAGGCGTCTCCAGTTCCGATCAGAGcgatgaaaaaacacaaagcagtttCAGTTCTCACACATATTGAAGAAACCTGTCctgacttgtttgttttctttaataaaatgcatatattgtgAATGTTTATTGCTGAACACACGCCTGACCAATAACCTCTAATGAAGGGACTGCAACTTTTTACTGAGTGTTTGACGTGACAATAAACACTGCATTGTTACTGACATTTGAACCATTGTGTTTGTTGTACCTTGTACccagtttttgtgtttctgac

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15108 SLC25A19, DNC, TPC1; solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013315 True 2374 mRNA 0.51 7 28172751 28179801

Neighbor

gene id symbol gene type direction distance location
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding upstream 5975 28161330 ~ 28166776 (+)
AMCG00013312 NA coding upstream 219408 27952383 ~ 27953343 (+)
AMCG00013311 NA coding upstream 225916 27936413 ~ 27946835 (+)
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding upstream 297267 27874493 ~ 27875484 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding upstream 358588 27811693 ~ 27814163 (+)
AMCG00013321 mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710 coding downstream 10634 28190435 ~ 28196943 (+)
AMCG00013322 NA coding downstream 20008 28199809 ~ 28208595 (+)
AMCG00013320 sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670 coding downstream 39265 28219066 ~ 28224436 (+)
AMCG00013324 NA coding downstream 47768 28227569 ~ 28234482 (+)
AMCG00013323 NA coding downstream 56982 28236783 ~ 28254407 (+)
G43438 NA non-coding upstream 754964 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1162100 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1242498 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1387190 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2328157 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 209888 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 558322 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 970177 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 976898 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 997250 29177051 ~ 29178266 (+)
AMCG00013317 NA other upstream 99952 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 236813 27928708 ~ 27935938 (+)
G43476 NA other upstream 581933 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 757465 27385665 ~ 27415286 (+)
G43434 NA other upstream 1014030 27158302 ~ 27158721 (+)
G43682 NA other downstream 304472 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 496741 28676542 ~ 28686138 (+)
G43802 NA other downstream 924488 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1460822 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1705961 29885762 ~ 29928697 (+)

Expression


Co-expression Network