AMCG00013317


Basic Information

Item Value
gene id AMCG00013317
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28007514 ~ 28072799 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013317
ATGAAAAGCAACACCTTTGATCCGTTCCTGTGCATCTCTCTTCCCATCCCTCTGCGCCAGACCAGACCCCTGTACGTGACACTGGTCTTCAGCACCAAGGGGCAGCGGTACCTGCGCGTGGGCCTGGCCGTCCCCCTGTTTGGCACGCTAGCCTGCCTGAGGGAGCTGGTGGCAGAGGAAGGGAAGATCTCCCCAGATCAGGTGATCCTGACCGAGATCTACACCACGGGGTTCCAGCGCTCCTTCTCCGATGAGGAGGATTTGACCAGCATCGCCGAGGGCGACAACATCTATGCCTTCCAGGCTCCGCCCCTCTACGGAAGGGGAGGCTCCGCACGATTCTCAGGTTACCATCACAGCCTACCCTCTTCCCCTTACACCTCTGGACCTGAAGGTCAAAGGTTACCTCCCACCGGCACCTTGTCCTCCGAGTTCTTGAACCACGGCAGCTCCTCGAAGATCCTCCTCCTCGTCTGTAACACGGCAGGGACCCGGCAGCAGGCAGTCAGaTTCGGGCCCCCGTTTCTCATGAGAGAAGACAGGACTGTAACCTGGGACCAATTACAACAGAGTATCCTCAGCAAACTCTACTACCTGATGATCAATGGAGCGCAGACGCAGAATGTAGGGGTCCTGTTTAAAATCCGAGTGGTGGGAGGATCAGCGGCCTACAGCTACCTGTCTCCTCAGGACAGCCGGCCTCTGTGCCACCCAGCCGTAGACAGGGCCCTGAAGTTCTGTGGACCGGGAGGACCTCCGCATGTGAAGCTCATCATCGAGTGGGAGCACAAGATCAAAGAGTGCCTGTTTGGCAACATCCAGGAGGAGGTGGTCCACGATGCGGACAGCGTCAGGGCCCAGCAGCAACAACACCTGCAGCAGCACAGTTGTACCCTGGACGAGTGCTTCACGCTGTACACCAAAGAGGAGCAGCTGGCCCCGGACGACGCGTGGAAGTGCCCGCACTGTAAGAAACTACAGCAGGGTATGGTGAAGCTCAGCCTGTGGACGCTGCCCGACATCCTCATCCTGCACCTGAAGCGCTTCCGGCAGGTGGGCGAGCGGCGCAACAAGCTCTCCACGCTAGTGCGCTTCCCGCTGACGGGCCTGGACATGGCACCCCACGTGGTCAAGAGGAGCCAGAGCGCCAAGACGCTGAACCCATGGCCCCCCGAGGCCGGCCAGCCACCCGACTTCCTGTACGACCTGTACGCCGTGTGTAACCACCACGGGGGGATGCATGGTGGCCACTACACAGCGTACTGCAGGAACTCAGTGGACGGGCAGTGGTACAGCTACGATGACAGCAGCGTGGATCTGGTGCCCGAGGAGGAGATCTGCACCCGCGGAGCCTACATCCTCTTCTACCAGAGACGGAACGCCATCCCCCCCTGGTCTGCCAGCAGCTCGATCAGAGGCTCCACCAGCTCCTCCATGTCTGATCACTGGCTCATCCGTCTGACGGGAGACAGCAAGAGAGGCAGCCTGGTGTCCCGAGTGTCGACCAACTGCGTCGCCTCCCTCCCCGACTCGCCCGAGTCCCCTGTCTTTCAGGACGAGCCCCTGAAGGAGGAGAGAGgcGGTTTTGACACCAGGCCATTTGTCCGCGGTATCCAGGGCAGGAGTGTCAGCATGAGGACGCCCACCAAGACCAAGGAGAGCATCGGCAAGGTGCTGCCCCTGCGCTGGTCCTTCGGGTCCAAGGACCGCAACAAGCCAGCGCCCGGGGAATTGGTGGAGTACCTGGAGTCGGGGCGCCGGCCGCGGTGCACCAAGGACTCCATCGTACCCTTGATGACGGTGACGAGTGACGAGGAGGGGGGGGGCGCTGCGGACGGGCGGACACAGGCTTCTGCCAGCCCGTCCCGGGGCATCGGCATGAGCTGCATGGGGAGGCCGAGTGGGGAGCCCTCGGACCCCAGCAGAGCACCCGAGGGGCAATCCAGACAGGCCAGCGAGAGGAGCAGCGCCTCGAGGAGGAGCAGCAAACAGAAGGATGACGGCACCCTGACCAGGAGGACGTCCAAGAAGACCAAGCAGGATCTGCCAGGAAAGCCTGAGGACACCTCTGCAGGGGGGCCCAGGAGGAGCTCCAGTGGGGTCATCCAGTCAGGCGCCAATCCGCCACCCAGCTGGGACACCACCTTGAAGAGGAGCAAGGCTTTAGCGGGCGCCAGGGATCGTGGGGATGGTGAACAGCAGTCGCCCCCAGAGGAGGACAAGGCGAGGAGGACCGAGGACACCAGGAGCCACGAAGGCAGGTTCTCCTTTTTAAAACCCAACTTCCTCAAGAAGGACTCCAGGAAGTCCAGGGAGTCAGAGGCGCACAGGAGCAGCGAGGCGAccagcagctcctccaggatcTCTCTCTCCAACGGCACGTTAAACAGGGCAGCCGAGGGCAAGGCCACCAGCAGCAGGAATAGGGAGGAGCTGGCCAATGGCAGGGTCAGCCGCTCCGCTGTGGACATCAAGCGCTCCCAGAGCTCCTCCAACATCCAGAGCAAATCCGAGCTGACTCTGCGGAGGACCGCCTCTCTGCACAAGAACGGTCTGTCCAACCCTGTGCCGCCACGCAGCGTCGCCTCCGACAAGCCCTCCTACGCCACGCTGCAGCGGACGCGCTACAGCACCGCGTCTCTGGGGAGGAAGAAGTCAGTGCCTGAATCAAGCTTCTGA
>TU54325
ACGGCACGTTAAACAGGGCAGCCGAGGGCAAGGCCACCAGCAGCAGGAATAGGGAGGAGCTGGCCAATGGCAGGGTCAGCCGCTCCGCTGTGGACATCAAGCGCTCCCAGAGCTCCTCCAACATCCAGAGCAAATCCGAGCTGACTCTGCGGAGGACCGCCTCTCTGCACAAGAACGGTCTGTCCAACCCTGTGCCGCCACGCAGCGTCGCCTCCGACAAGCCCTCCTACGCCACGCTGCAGCGGACGCGCTACAGCACCGCGTCTCTGGGGAGGAAGAAGTCAGTGCCTGAATCAAGCTTCTGAAGATGTGGGAGGGAAAATACAAAACCCGACTCAAAGCGTCTCCAAGTCAAGCAATATGTACCAAGTGTACAGTTTAGAACGTGTACCTCGTTTCCCAAGATGCACCACTCCCGCTGAAGGAGTCCTCAGTCGAGATGCTGATCTCGTCTCGAGAGAAACAACAGGCTGGATGTGACCCGTGGGGAATTAGCAGCCATTTTAATATGCAGAGAAAAGGCAGTTGTGTTATTGGGGAGATCGAGTGAGAAAAGCTCAGATTTAAGCAGAATGGGTGTTTCTTTAGATTTtatcagttctgtttttttatcgTTTTGTTCAGGGTGTCTTCGTGACACCTAAGCTGACAGTAAGTGCCTCTGTAAACTGATTTTCCAGTTCACAAACGTCTTTGGATACAAGTGTACAACAAGAGCATGTCTAGTTCACACAGATCTGGCACTCGTATCTCAACACCATGAACTGAGTTTCCCGAAAAggctcagatttatttttctttccctctttcttttggttttgtatgGAATTTGGAAGCGACATGTAGAAAAACAAGACATCTATGCAGAAACACAATCTAAAACAGAAGAAAGatgactattttatttatattttttgtatggcACCACTAAAGCAATTCACTCCCCGCATTCTTTGTAAATAGAAGTGGTTTAAAAGATACATATCAGTTAGTACTAACTTAGCTAACCACACCGTAACAAGCCGAGCTCTGTGAATAACgaacagattttatttgtgCTTGTATTTCATAATGGCTGCTAGATTTTAAGGCTCGtgatgacaaaaataatacaaatactgtatcgatacaaaaatgttttttttttacttttttgcactttttttatAAAGCCAACACCACCAAACCTTTACTTtgcctgcagtgtgtgtttgaaagTGACAATCTGAAACTGGCCCAAGAAAGTATAGACCATTTTCTTCATTAACTTTCTGCATCAGTAGTTTAAAtggattcatttttaattttcaaaaaacGAACTAAGAAAGGCAGTGTTAATGAACATGAAACAACCGGACACTTTTTTTCCACTGACAATCAACAGTAGCCTGTACTCTGAGATGgacaaacaatttattttaccaggtctttcctctctctctctctctctcttcatcagATAAGGCatgtttattatcttttttcatTGATCACTTAGATCAGTTTGTTCCAAAGAAATCATGTAACGTAAGATGGGTCAGCAGAGTGTGTTCATGAGAGAGGCTTATAACGTCTCCAGAACACGCAATGTGTTGAGTGTAGTGTTGGGGCAGTGCAGTGACCATGTTTACATTTGCAACAAGACTGTTAAACTGACTTCACACCTTGCCGTTGCTTGTGTTTAGGGAAGCAGACAGGGTCATTTGCTTAACAACCCCAATTTCAAAAATCAATCCAAACAAAAGAGATAACCACTTAAGTGTTTTATCACATACAAAAGCCATCAGTGACATGTGACCATGCCTTCTCGCCTCAGTTCTTTGGCACCACTCCTTGGCATTGAATGTCAAAGCTGGTTTGTTCTGACACTCCCATTCCTTCTGCTGTTTCAAGTCCTCTCTACACGCTTTGTCTGAGCTCCCATTGGCTCTCCCCCCCTTAACATTGACCGAAGAGGGTTACATTTTCGAGAATAACTCGGCACAGGCCTGGTCTTTATGCAGGAGAAGCTGACGTACTGCTCAATTCAGTCTGATCACTAAAATCTAGACCTTGTTTGTATCCGATAAGAAATGTCACCAGCCGAGCTAACCTAGAACACAAAGGCAGTCCGAATCCAGCTATGcataaaaacactgaagttCGGCTTGGAGACCAATTTGATTTTACGAGTCCGGTTTCCCAGAAAATAAATTGGCTGGAAGCATCATAGTTAaaatctttctctttcttaGAGTGTATGTCTGGCCTCACAGAGTTCATCATGTACTTGGCATAAGGTTGGCGATTTTATAATCCATGACCTTTACGAATTCACAACAGCAATACACCATTGCAGAGGACGTCCAGAAAGAGCTTCAAACTTGCAGACTTTTTTCGCATTATGATACCCTGAGCAGCTGCTGTGCTTTACATCTCATTTTTCATTGTATGGCAGTCTTTACGTTGTGCCGTAACTTATATGACACACATGCAGCCTGACTGGGGCATTAATTAATGCACCGGGGTCCTGTGTACAGAATTGAGTCTTCATCCTTCTCTTTTGCAGTTATTATTGCAGGAACAGTACTCTCACATTTTTCATATGCATAAACTTGTGCGCTAAAAGATTTCCCAGGTGGATATAAATCATCCCAGATACCATCCCTTCGGTCGTAGTAATTCCTCACGCCAGGAACCTTTCAGCCCTTTTACATCTAGAACAAAATGCTGGCAGCTCTTTGCAGTTTTATCTGAGTGCGACGATTACTTTGATCAATTGCTGTTAAGTGTAATGGAGGTCTCCCCAAGGGGAACTGAAAAATCACATATTACTCAATGAATctaactgtttattttctgcatcTTTGCTTTTTATGTGGAAGCTGGAGTCGTCTGCCGATTTAACATCTCCCAGCGGCGCTGTTTTCTTAGAATTTACCGGGATGAATGCTAAAATGGTTGTTTCGCCACAGATTGTGTATTTCTACACTATTcaagtcatttttttaacacCACTTACTATCATTTGCACACAGAACGATGATATGACTATGAACTCTTGCTCAACAGAACCATTTATTTCCAGATTctgtttttctcagttttccCAAAGTTACATCATTAATTGTGTAAGTGGCTTGTCATAACCCTTCTCAAGATCATTGGCAGTGCAATCTTAAGTGGCCGGGATCCTCCCTCTTGCACATAAAGTCCCAACAAGATCTCTATAGCTTTCTGGAAAAAACGGCAGGCGGTGGGGGGGTTTCTTTTGGTCTGTGATCATTAAAACTTCTGGGTTTAATGACAAACCAGAAGTCAACAGCAAAGTTTTGGTTTTCAGTATGTTTGTCCCTTATTAGATGTAATTCCACTCGAAGGAATTCTTGCCAAATTGCTGTATGTAAAAGGCATTAGTCAGagaatgtaaaagaaaaaaaaaaagcttgattaTCATAATTGTACAGTGGCCTTTATTATAAAGTTTGTACTGCATTTACGTCTTATCTTGCAGGCCCAAGAGTGCACATCCATATTCAGACGGATATTACCAGTGCagttcacatttaattatttgtttagtttcgGGTTTGTTTCATTGAATTGCTTTACAGAAGAAAAGGAACAGAGGATTAAAAATCTGAACAAGATCCAAAgcttgcattttgtatttgtttccaataTTAATGTCTTTGTTCCTGCTTCTCTTTACATCCATACACCACAAGCACCCAATCACAATGTTTACCAAAATGAGCActtgtaaaaacagaaataaaaaataatgagggaaaagaataaaaagaaaaaacttagTATGTGaatgaaggatttttttttttcagtacttTGTGAAATGTGTGGGGTTGAGATGTTTTTATATCCTTTTTTTGTAAGGTTTTACAATTTATACCTGCTTTGTAAATAATTGTAGATGTGAAATAATGTGGACTCTCGAGTTCTGTTCGGTGGGCTTGGTGTCGGAGGGTAAAGCACAAACGTAGAACTTCAATCAAGTCCATCTTGTCAGCTGTTGAAGGGTGGGTATAAAATGGGCCTAGCACACACgttataaaattataatgacAACAAAGGTTTGTATTTACCTAAGATGTCTGCTTTACATGatatatggttttatttttaatactgcaaataaaacacattatttatca

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013317 False 2679 mRNA 0.62 13 28007514 28068950
TU54325 True 4154 lncRNA 0.40 1 28068646 28072799

Neighbor

gene id symbol gene type direction distance location
AMCG00013312 NA coding upstream 54171 27952383 ~ 27953343 (+)
AMCG00013311 NA coding upstream 60679 27936413 ~ 27946835 (+)
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding upstream 132030 27874493 ~ 27875484 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding upstream 193351 27811693 ~ 27814163 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding upstream 398046 27592775 ~ 27609468 (+)
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding downstream 88531 28161330 ~ 28166776 (+)
AMCG00013315 NA coding downstream 99952 28172751 ~ 28179801 (+)
AMCG00013321 mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710 coding downstream 117636 28190435 ~ 28196943 (+)
AMCG00013322 NA coding downstream 127010 28199809 ~ 28208595 (+)
AMCG00013320 sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670 coding downstream 146267 28219066 ~ 28224436 (+)
G43438 NA non-coding upstream 589727 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 996863 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1077261 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1221953 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2162920 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 316890 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 665324 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 1077179 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 1083900 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 1104252 29177051 ~ 29178266 (+)
AMCG00013310 NA other upstream 71576 27928708 ~ 27935938 (+)
G43476 NA other upstream 416696 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 592228 27385665 ~ 27415286 (+)
G43434 NA other upstream 848793 27158302 ~ 27158721 (+)
AMCG00013281 NA other upstream 1084375 26892596 ~ 26923139 (+)
G43682 NA other downstream 411474 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 603743 28676542 ~ 28686138 (+)
G43802 NA other downstream 1031490 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1567824 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1812963 29885762 ~ 29928697 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G6881 usp43,LOC104947996 unknown NC_053112.1 CM020909.1 22981925 ~ 22988500 (-)
bowfin (Amia calva) G7587 NA non-coding CM030121.1 CM030121.1 44408360 ~ 44408665 (-)