AMCG00013318


Basic Information

Item Value
gene id AMCG00013318
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28074541 ~ 28078702 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013318
ATGGCTGCATTCAACTTGGGAAGCCTGTTTCTGAGCCCAACACCCAACACCCCAGAACCTACCGAAACACATCGCATCATCCAGCTTGTACAAGAGGGGAACCTGAGAAAGCTGAAGAAATTGATAACTGAGAAGAACATAAATGAGCTTCATCCATGTTCCATTTCCATAGACTACATAACCCCATTGATGGCTGCAGCAAAGTCAGGCAGAGAAGACATTTGTACATTCCTGCTGAAACAGGGTGCAAATCCCAACAtgctttcaataaataaacagtctgTCCTGAATTATGCCTCGTATAGTTCAGTGAATATAGTAAAGCAGTTGATCGCAGCAAATGCTGATCCAAATGTCATTGGTCTTATGACACCAGTTCAGTTTGCTGCTACAATTCAAAGGGATGACATTGTTAAGGAGCTAATACTATCTGGAGCAAGTCCTGAAATGTGTGTAAACTTTAATAGAGAAACTCATGAAAAGGTATTGGAAAGTCTCAAGAATTTGGCCTCAAAAAGTCAGGATTTTGTCACAATTAAGAAGTTGTATGATTTCACAGTAACATTGTGGGGGAACGCAAAACCAGAAGAAGTGCTGACACAGTACAGAGAGGATCTGCAGGAAGAACACCCAGTGCACCATCACACTATGGTGGAGGTTTGCTTCAGCCTGGATAATGTGGACCTCCATCGGCTGTGCATTGAGGCAttacagaaaactaaaaaacttgATGTGTATGCTAATGAAATATCCAGCAGGTTATCAAGAGTTACAATGTGTTACAAACAGCTTgcaattaaaagtttaaatgcaGTTTGCTGTGTGCTGAGAGAAATACCTCTAGAGCTTTCAATTAATGTTGTTCCCACTTTACTTGAATTACTTATTGACCCGAGAATCTCATGTGAAATGCATTACACGATTCTTACACTACTATATGTGATTGTGCAAAAGACTTCAGGACGTCAGTATGGCTGGGAGAAACTATTTATTGAAAACCTCTGCAAAGGAGTCATTTCTTTTACTGCAACTGAATACCCTCCAGATGTGGGGATAGTTGCCTATGCCATAATTGCAGATCTGTATGAATACCAGTGTGTATCTGACATGATCACTGAAATGAGAATCACTTCAGTACcagagaaaataattcagacTGCAGATATGGGAATGAATGAGGAGATGAAAGAAAGAATTAGAAACCTGAATTCAGCCCTATCAAAAAAATGCTATTCAAAGGAGACTGGTGACAATTTGTCTGACGGAGTAAAGAATTTAACATtgtctaaaaagaaaaagaaaaaaaagaaaaagaagaggcCAGGATTGAAGGAGCAATCTAAAGGTGAAGAAGGCATCATTTCAGAAGCAGTAATGGAAAGCAGTGTTATAGAGAAGACACAGTCTCGTTTTGACGGTAAAATGGGCACACCAGTTGAAGAAGTAGGAGACCCCCaacctactactactactatatcTGGGGATTCGATTAAGGATGATGTCACCAATCCTTTCATTGACTTATCAAAAAAGTTCCCCCGTCGCTGGCACAGCATCTCTGTTCGGTGGAAATCACAGTTGCAAATGTTGGCCAATATGGATTCAAGTCACATGACAAAGGTGGGAAGCCTGAATTTTAAAGTCTCTGACCAGTACCGGATAGCAAAAGGAAATGATGGCACTGAAGTCTATCTGGGTTTGAGGGATGATGGGACAGAAGTAGCCATTAAAAGAATTCTAAAGTCAAACTATGAAGCTCTCAAGCATGAATTATCAATTATACGTCTCGCACACCTTGACAGCCCCCACATTGTCCATTATGTAGATTTTGCTGAAGATGAACACTTTGGTTACCTTGTTCTTCAGCTGTGTGAGTACAGCCTAGAAGAATACATCACAGACCATCTACCCCAGGATAACAGTAAAGAGGCTGTGAAGGAACTCCTTCGTCATATCTTCAGTGGTTTATCTGTTCTTCACAAAAAAGGCACCAAGATACTCCACAGGGATATCAAAccccaaaatgttttaatagATATAACTGGGAAAGCAAGATTGGCAGACTTTGGCATTAGTCGTAAATTACATGTGGATCAAACTACTCTTCACACTAAAAGCATGGGAACCAGATGCTGGATGCCCTGGGAAGCCATTGACCAGGATAGAGACCATGGGTATAAACGCTGCTCTGATATCCAGGTGGCTGGGATGTTGATGTATTACACCCTGTCTGGCGGTCATCATCCCTTTGGAAACTATATTAGTTGTGAGGTCAACATTCTGAAAGGGGATTACAATCTGGACAGAGTGCAGGATGACCTTGCGAAGGACCTGATCGAGTGGATGATTACATGTGAGCCAGAGAAAAGACCCAGTATAGAGGAGGTCCTCATTCATCCCTACTTCTGGACTGATAAAAAGAAAGTTGAGTACCTGGTCAAAGTTGGCAATGAAGAGGAGGTTGTCAAAAGAGACAACGCTGACGTGAAGATCGTTGAGGCTCTGGAGCAGCTGACTGCAGGGAGATCATTCAGTCAGTGGAAATCCAAGCTGGACCCTGAGCTGGTTAAAAAGCTGGACAGGAAGAAGAAATCGTATCCCGAAAACACACTGGGCCTTCTGCGCTTTATACGCAACTTGCACGAGCACTGGAAGCCTGAGGCAGCAGCCCTTGACCTGTTTGCTGTATTTCCTGATCTCTTCTCTTGTGTGTACAAGTTTGCCAAGGCCAATGGATGGAATGAAAGAATCGCTCTAAGGACATACTTTGAAGATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013318 True 2778 mRNA 0.42 6 28074541 28078702

Neighbor

gene id symbol gene type direction distance location
AMCG00013313 stx8 coding downstream 147214 27917922 ~ 27927327 (-)
AMCG00013314 NA coding downstream 173652 27892338 ~ 27900889 (-)
AMCG00013306 NA coding downstream 286073 27774263 ~ 27788468 (-)
AMCG00013305 NA coding downstream 307313 27749632 ~ 27767228 (-)
AMCG00013309 NA coding downstream 328626 27744038 ~ 27745915 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding upstream 49966 28128668 ~ 28130132 (-)
AMCG00013325 LOC107724659,LOC107579769 coding upstream 118255 28196957 ~ 28199793 (-)
AMCG00013326 nup85,LOC106601803 coding upstream 131701 28210403 ~ 28218058 (-)
AMCG00013331 NA coding upstream 414244 28492946 ~ 28495999 (-)
AMCG00013332 NA coding upstream 423320 28502022 ~ 28521437 (-)
G43593 NA non-coding downstream 12088 28062249 ~ 28062453 (-)
G43592 LOC105901958,LOC107704008 non-coding downstream 13372 28060844 ~ 28061169 (-)
G43590 NA non-coding downstream 108308 27966012 ~ 27966233 (-)
G43518 NA non-coding downstream 357498 27714039 ~ 27717043 (-)
G43435 NA non-coding downstream 915812 27158301 ~ 27158729 (-)
G43626 NA non-coding upstream 150708 28229410 ~ 28234706 (-)
G43670 NA non-coding upstream 264575 28343277 ~ 28347474 (-)
G43685 NA non-coding upstream 391632 28470334 ~ 28470537 (-)
G43686 NA non-coding upstream 396406 28475108 ~ 28475326 (-)
G43687 NA non-coding upstream 396754 28475456 ~ 28476100 (-)
G43594 NA other downstream 1754 28068213 ~ 28072787 (-)
G43473 NA other downstream 505390 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 781468 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1517217 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1590127 26479611 ~ 26484414 (-)
G43684 NA other upstream 388610 28467312 ~ 28467906 (-)
G43869 NA other upstream 1174694 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1847681 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1961503 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 2001912 30080614 ~ 30083441 (-)

Expression


Co-expression Network