AMCG00013320 (sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670)


Basic Information

Item Value
gene id AMCG00013320
gene name sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28219066 ~ 28224436 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013320
CGCATTGTCTCGTGTGCGCGCACGCAATGCCGGTTTAATGTTCGGCGGCGCGGACGTGCGCGTCCCCGAAGACTCTTTGTGTGGCGGCGTAGAGAAACGCGGAGAGAATAGCCATGGCGGACGAAAAACCCAAGGAAGGCGTTAAGACGGAAAACAACGACCATATTAACCTGAAGGTGGCTGGGCAGGACGGCTCAGTGGTGCAGTTTAAGATCAAGAGGCACACGCCACTCAGCAAACTCATGAAAGCATACTGCGAGAGACAGGGCTTGACGATGAGGCAAATCCGATTCCGGTTTGATGGGCAGCCAATCAACGAGACAGACACACCTGCACAGTTGGAAATGGAAGATGAAGACACGATCGATGTTTTTCAGCAACAAACAGGAGGTCTCTACTAAAAGCAACACattcacccccccctcccctctttcCAAATACTGTTCCTTTGCAAACTCTTCCCATTATCACTGCAGGATAAGTTCAGTACAAAATTAGAGAGGATTTCACAGTTATACTTAACTACTGTTGTATagtgttttcattcttttttttgtttgtacataATTAACCTCAAGTGTTGGCAAACACTCGTTTAGCTACCAAGAAGTGGCCCGTCTGACAACTTTGaccaaaacacagaaagcagaCTGGGAATCTGATCCCAAATTGTTGGGGATTGTGGTGAAGTCTTTCCAAAATAAAGTTTCCCAGTAAGTTATTTTTATCTCATTCTTTGGGAGATTGAGATTTACTGGTTTTCTGACTTTCTTTTATCATCATCAGAAGATGGattttatatctttttttttttttatatattgtagtgATTGTGTAGAATGGATCTTGTCTTAAAAGTAGTTTGATTAGGCCATATGTTAAAAGGACGCCCTGCTATGGGGTTTCTAAAGTCAGACAtctgtattgtttaataaatttcttgttaaaataaaaatattctctttttttaattaaacttttttttgtcttttgcatCAACCATGTAAAGCTGATGTTGTGAAATGGGAGAGCAGTGGGAGTACAGGACAAAGCGCTGTGAAATTCTGTGCATCGGTCATTGATCAGCAGTATAAGCTCATTCGGTAGTCTCTTTAGGTCTTTTAATAGCCTTTTTACACTTATAATACAACATAAATCATGAAACCCTAGGCGGTGTTATACCATCCTAATTCAGTTGATGTTTAGAGTGTGGGTGTTAAACTGCTGATCTGGAATTTAAGCGAactgattttcttttgattgAAAATTCCACATAGCTCAGAGTGAACACAAAAGCAATACCATGATCTCATGCGTTCCTGTATAGAGCACCCAGGGGTTTTAAGGCAGTCCCTTGCTGTAGAAGCTGGTACAAGGTTTGGCTTTTCTAGACTCCTAGAGTGTAAATACTTAAGTGGAACGCACAGTTTCTTCAGTGAGGTATGGATCTGTGGTGCTTCAGCTGTGCCTTAATCTCTCCAGTGAACTGGACCTGATCCAGAACATTCATAGCCTGTATAACTGTTTGTGTATAGTtgcattgtattcattttaagaaTTAAAGCTTTAATCTTTTCAGTGGCAGACCCTATCCTTCCCCCATGGAGATTTCAATCCagaaaatgtctgtgtgtgattatgTGCAGGTCTTTAATAAGGGAGCATCCTCATTTATTCCTGCTCTTCACAGGATGCTTTGAAGCCGAGACCTTCAATAACTTTAGTGTAATGCCGTCATTTGACAACTTGCAAGCTCTAAAAATCTAAACGGAATAGATGTCCTGATTTTCAATGTTATGGTTTTTAAACCCGAGTCCAaaccattattttgtattgcaacATAGACTGATTAAGTGCTGCTTCAAACTGCATTTTCTGTGGCTTTGATATAAATTGCGT

Function

symbol description
sumo2b Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Acts upstream of or within chordate embryonic development and definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; cranial neural crest cell; digestive system; eye; and pectoral fin bud. Orthologous to human SUMO2 (small ubiquitin like modifier 2).
sumo2 Enables ubiquitin protein ligase binding activity. Involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein sumoylation. Located in PML body.

NR:

description
PREDICTED: small ubiquitin-related modifier 2

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013320 True 1899 mRNA 0.40 4 28219066 28224436

Neighbor

gene id symbol gene type direction distance location
AMCG00013322 NA coding upstream 10471 28199809 ~ 28208595 (+)
AMCG00013321 mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710 coding upstream 22123 28190435 ~ 28196943 (+)
AMCG00013315 NA coding upstream 39265 28172751 ~ 28179801 (+)
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding upstream 52290 28161330 ~ 28166776 (+)
AMCG00013312 NA coding upstream 265723 27952383 ~ 27953343 (+)
AMCG00013324 NA coding downstream 3133 28227569 ~ 28234482 (+)
AMCG00013323 NA coding downstream 12347 28236783 ~ 28254407 (+)
AMCG00013328 NA coding downstream 78917 28303353 ~ 28305608 (+)
AMCG00013327 NA coding downstream 98473 28322909 ~ 28343487 (+)
AMCG00013329 tnrc6c,LOC107724432 coding downstream 239926 28464362 ~ 28483978 (+)
G43438 NA non-coding upstream 801279 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1208415 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1288813 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1433505 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2374472 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 165253 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 513687 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 925542 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 932263 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 952615 29177051 ~ 29178266 (+)
AMCG00013317 NA other upstream 146267 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 283128 27928708 ~ 27935938 (+)
G43476 NA other upstream 628248 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 803780 27385665 ~ 27415286 (+)
G43434 NA other upstream 1060345 27158302 ~ 27158721 (+)
G43682 NA other downstream 259837 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 452106 28676542 ~ 28686138 (+)
G43802 NA other downstream 879853 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1416187 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1661326 29885762 ~ 29928697 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location