AMCG00013321 (mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710)


Basic Information

Item Value
gene id AMCG00013321
gene name mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28190435 ~ 28196943 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013321
TACAGGTTTGGGCAGATGGACACAGTGTCGCAGTGACTGGCGCGCTTATTACGTCATTTCGCGATAATAACTTCCACTGCGTGACGTAAGAACTGCCTGCAGAGAAAGCGCTTGCAATTTCGGAAcgtgttttatgtattttCCAGGGATTTCCAGTCTGTGTGCGACTTGTCCAAATTGGCGGTGTGCCCGGGAACCATGGAGAACTCTGGCAAGGAGGAATACAAGATCCAGTCCTTCGACATCGAGACACAGCAGCTACTCAAAACTGCACTGAAAGAGCCGAGCACCGTGGATCTGGAGAAGGTGGCCAATGTCATTGTAGACCAGTCTCTGAAGGACCAGGTGTTCAGCAAAGAGGCCGGCAGGATCTGCTACACCATAGTCCAGGCCGAGGCCAAGCAGAACAACGCCAACGTGTTCCGGCGGAATCTCCTGAACCGACTACAGCAGGAGTTCAAGAACCGTGAGGAGACGCGCGGCCGCTCCCTGCAGGAGTGGGTGTGCTACGTCACGTTCATCTGCAATGTCTTCGACTACCTCAAGGTGGGCACCCCGGCCCGGGTGAACAACATGCCCATGATGGCGCTGGTCCACCCGGTGTACGACTGCCTGTTCAGACTGGGCCAGCCGGACTCCCTGCAGAACGAGGAGGAGgtgGACTGCCTGGTGCTGCAGCTGCACCGCATCGGTGACCAGCTGGAGAAGATGAACGTGCAGCGCATGGACGAGCTGTTCTTCCTGCTGAGGGACGGCTTCCTGCTCCAGGAGGGGCTGGGCTCGCTGGCCCGGCTGCTGCTGCTCGAGGTGCTGGAGTTCAGGGCTGGGGGCTGGCGGCTCAGCGACACGGCGCAGAAATACTACTACAGCGAGGTCTCCGACTGAGCCGGGGCCGGGGAAGGGGAAGGGATGCCAGGCTGATGGgcatggagacagagagagagggagggaaatgtAGAGTCACTTTGATTTATAGACTTCACTGTCAGGCAGAGATGGGGAAGAAGCAGAGACTGGGGAAGATCACAACCCCAGTTACACAGGATTTAAtcacatgtaaaaaaaaatatatataggattTGAACAGTGGGTTGGTTAATTTCTacataataatcctaacaaatgacatgtgtgtgtatattagaTTGAAGAAAGCACTGGTATGGTTTCAGATTGGCCAGTTTGTTCTGTGCCACCAGGTAGGTCAGCTAAGTGCCAACGCCATGTTGAATAACAGGGGAGACGAGGGAGGAGGTTTGAAATTCAAACTGAGTCCTTAATTCACTTTCCTTCGTTacacgtttttatttatttatctatattgttttaatgattgcatttttatgtttgGTGAGATTccggaggaggggagagagtgaTATCGTGCCATGTCCAGggtgccgtgccgtgccatgcATCGTTTCCCGTTACGGATCCAGGCCTCCCTGTAGTGACCAGGCTTTCTGGTGCGGCTCTGTCCTGGGATCTTGAAATATCTGGCCTCAATATCTGATATTTCTCATACCTGGTGTGGACATTGTAGTGCAAGTCCCACCAGGCTTCCTCCTGCTACATTTGGGTCATTTACAGTTGTCTTTTGGAATTCAATTAATCAGTCGATTGCAGTTCAGTGACCCCGTTGTCCTGCTTCAGATTTAGAAATGCAACAAACCCATGATTGGCTGATCTCTGCCTATTTTACTCCGTGACCATTACAATATCcaatttatgtgtttttatttatttttttatacgttacattttatgttgtaaTTCTGCAGCATAATTGCTATTGCTCAAACTACGGATATCGTCCTAATTCAGACTCGCAAAAATGTCTGTAGttgtaattacaattataattggCCGGGGACCTGAGAAAGAAACTGCAAAAGCTTAAGACattggaaaaaatatgaatccaCCATCttcatagaaaaatatacatttgttcctgttatatttttttctgactaGAGTTTTTCAAATTATGGTATTGTATAAATCGGTTTTAATAGTCCCAAGCAGGCTAGGACTACCGCCAGCAATCACTCACACTGCCAACACAAGCTTAGCAGTCAATTCGCGATCCAAGCCAttgctctgctgctgctgcactgcAACATACCCGACACTGACGGATAACTGACCCTCTCAAACTGAACTGGAAGGGAGTTGGTACGGATGCACATATGTACGTACTCTAGGACCGCTATCGtcgtgttttcttttctcaccGGAGCAACATTGAGCATTGTCACGTGGGCGTTTATTGTCGCCGATACGGGGGCTGGGGGAAGTGTTTCGATGGAATTAGAAAGGTTGCTTGACTTTTGGCCAAAGATGGCGCGCACTGCCTGACGCCAGCTGACATGCCTGACCTCCGCAGCACACTTGATGGCTGGCGAAGGAAGGGCTGCCCTGGCAGTGAGTTAATATACTGCTGAGTCTGCATCATGGTCTCGGAGCTGGAAGCTATGCGGAGAGAGAGGTGCCAGTATATTTAACTAACTCGCTGGGAATTTCACTAACGCCATAGATACACAAATTCAGCCTTCTTTTAATCGCACGTCGAGTCTTACTTTGAAATGGAATATTACACgtcaaaatcaattaaaagaaTAACAGACATTTAAGTTAATGTAACAAGCTCTTAAAAAACAGGTCCTTGCTGAAGAGCAGGGGTATATGTTGGGAAGAGGAACTAAGGGCCAGTGCATCCTTGAATAAAACCTCAgtgagttaaaaaataaaacactggttCACAATCATCAGCACCCTGCGAGATTGACATTCCTCTTCACGTATGTTTCACACAGatgggtgtttttgtttttcataatgagCAACCAAAAGCGCTCCCTGCATGGAGGTTACAGGTTCTGATGGGTCGCCAGGAGAATGTTCTGTTCCGGAGGTCGGGTTCTGTCCCGGCGATTCTCATTCTAACCCCCTGCTGCTTGAACACCCTGGAGGTGAACCTGCTTTTGGCTCTGTCAAGGATTCACTGCTTATTGGAACAACTTCTTATGGCATCTATAACTTTTCTACACAGATTTTGATACAgaatttatctttattttttattttgtcttttgaagGTCGTTCTACCAGAGCTTGAACCACTTTCTGGtgctaattataaaatgtatatattgccGGTATGATtaggaattcaaaataaaatatataaaaatgctttttaaggAGCTAAAGGCTAACCCACACAATCccattacataaatatattttcccctgATCATAACCCATTATGATGCTGGGAATACTGTACTGGGAATGGTTTTCTATGCTTTTTCAATTGACCATTTCCTCATTTAAGTAGCTCTTTGCTAGACTGTTTCAGCTGGATATTTCCCAAAAGATGAAAACTTGAAGACTCTCTAGTCTTAGAATGTATTTCCATATCAGTTCTTCAGGATAATTTCAAAGTACCGTTGTCCATTTCATCAAGGAGTTAAGGTTTGTCGAATGCCCactgatatatttatatgatcATCATGGGGCGGTGGCAGTCCTAGATTATTTACAGGACTAATTATATCAATTACATGTATGGATTGTGTGGGCTGCTTTTAGAAATGCAGTAtttgtgatacattttttttaatttattttttttaatgtgttttcgGTGGTTCGGTATTTTGACAACTTTGGAAAAAACGGTATTTAGTAAGGAATTAGGaatattttggtttgtgtttaacTGCTAATTTAGCATGACTTGCTTTGACTGATCTTTGATCTGAATGATGACACCTGTATAAATGACATTTCTACCAATCTGATactgatttatatttcaatGGATAGAATGATTGAAAATTCAGACCCTTGCTCACTAAGATGGAAGAATTCAGTTTTACCTGATGTATTTCAAAGCCTTAACTGCTTTACACAgcatattatataattacatacacagtgcagtgtgaaaCTGTggattttataataaaacaatgaggTGCAGCTTAGATAAAATACGTGCTCAGCCATACGTGGGGTTCTGGAGAACTGGAGTCAAGAACCCTAGgtttttaaaagctgaaatCTCACTTAAACTTCCCTTCCCAAAAAAGCATGATGCCCTTGTGGCAGGTTTCACTATTCAGGTctgatttgtaattgtttatagGTGTTCTTATGGCTACAGATTGAGGTCTAATGGGGTTTTCCTTAAAGCGAAGGGAATTAATAGGATTTCTGTTAATAGTGATTAACATTCATGAGAAATgttgatttttctctttttgtactGATGAATTTATACTTTGATAGATGTTTcacatgtttttcttccccaACATACAAAGATTGTAGAGAAAATATAGTTAAGAGTTTTGAATTgttaaaaactataataataaaaaag

Function

symbol description
mif4gdb Enables identical protein binding activity. Predicted to be involved in regulation of translational initiation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human MIF4GD (MIF4G domain containing).
mif4gd Enables identical protein binding activity and protein C-terminus binding activity. Predicted to be involved in regulation of translational initiation. Located in Golgi apparatus; cytosol; and nucleolus.

NR:

description
PREDICTED: MIF4G domain-containing protein

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013321 True 4393 mRNA 0.43 6 28190435 28196943

Neighbor

gene id symbol gene type direction distance location
AMCG00013315 NA coding upstream 10634 28172751 ~ 28179801 (+)
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding upstream 23659 28161330 ~ 28166776 (+)
AMCG00013312 NA coding upstream 237092 27952383 ~ 27953343 (+)
AMCG00013311 NA coding upstream 243600 27936413 ~ 27946835 (+)
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding upstream 314951 27874493 ~ 27875484 (+)
AMCG00013322 NA coding downstream 2866 28199809 ~ 28208595 (+)
AMCG00013320 sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670 coding downstream 22123 28219066 ~ 28224436 (+)
AMCG00013324 NA coding downstream 30626 28227569 ~ 28234482 (+)
AMCG00013323 NA coding downstream 39840 28236783 ~ 28254407 (+)
AMCG00013328 NA coding downstream 106410 28303353 ~ 28305608 (+)
G43438 NA non-coding upstream 772648 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1179784 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1260182 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1404874 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2345841 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 192746 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 541180 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 953035 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 959756 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 980108 29177051 ~ 29178266 (+)
AMCG00013317 NA other upstream 117636 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 254497 27928708 ~ 27935938 (+)
G43476 NA other upstream 599617 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 775149 27385665 ~ 27415286 (+)
G43434 NA other upstream 1031714 27158302 ~ 27158721 (+)
G43682 NA other downstream 287330 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 479599 28676542 ~ 28686138 (+)
G43802 NA other downstream 907346 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1443680 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1688819 29885762 ~ 29928697 (+)

Expression


Co-expression Network