AMCG00013322


Basic Information

Item Value
gene id AMCG00013322
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28199809 ~ 28208595 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013322
CACAAGTCTCGTCTGGTCTCGCCGAGGCGCAGTACTCTCGCGATGATTCCAGCGCTGTGAATATGGCGGATCCGGAAGGGGAGTCGCTGGAGTCTTGGCTCAATAAAGCCACAAACCCCTCCAACAGACAGGAAGACTGGGAATACATCATAGGGTTCTGTGACCAAATCAATAAGGAATTGGAAGGGTATGGGATTGAAACTGATCCGTCTTTAGCCACAAAAAATATAGCTGTCAGGTTGCTGGCTCATAAAATCCAGTCTCCTCAGGAATGGGAGGCCATACAGGCATTGACATACCTGGGTGACCGGGTATCAGAAAGGGTGAAGACAAAAGTGATCAAAATGCTGTACAGCTGGGCCGTGGCCCTGCCCGACGAAGCCAAAATCAATGAAGCCTATCAGATGTTAAAACGCCAAGGCATTGTTACTTCGGACCCGGAGATCCCCGTAGATAAGACTCTGATTCCCTCTCCCCCGGCCCGGCCCAAGAACCCTGTTTTTGAGAATGAGGAGAAGAGCAAGGACGAAGCCCGGATGCAGAAGGTGACGAAGCGCGTGAACACCCTGGAGGAGGTCAACAACAATGTGAAGCTCCTCAACGAGATGCTGACGCACTTCAACCGGGAGGAGTCCTCCGAGGCGGACAAGGAGCTGATCAAGGAGCTGTACGATCGCTGTGACAAGCTGAGACGCACTGTGTTCAAACTGGCCACTGAGACGGAGGACAACGACAACAGCTTAGGTGACATCCTGCAGGCGAGCGACGATCTCTCCCGGGTCATTAACTCCTACAAGAGGACGGTGGAGGGGCTGGCGGTCAACGGAGAGATCGACGCTCTGGGATCATCAGCTAGTGAACGAAGTAAAGGCAGCAGCAACACGGAGACTCTCATTGACCTGGCTGGCCCTGATGAGCCAAgcccctcccccccagaagCAGTTCACCCCCAACTTCCTCTGGAAACCCCACCCAACCCACTGCTGCTAGCCCCGGCCAATCCCCCGCCAATGTCGGCCGATCCCAGGCCACTCCCAGCCAATCTGCTCGTAGCTTCCGCCAATGCTCTGGTGGCCTCCTCGATTCCGGTcctgcccccgcccccccaggGGTCGGCCGGGTCCCAGAGCTGCCCCGTTGGCCAGTGTGAGGGCCCTGCCCTTCAGCTGACGGGCAACAGCTACACTGCCCTCTCTCTGCTGGACGAAGAGCTGCTCTCTCTagGGTTGAATGATCCTGCACCCACTTTAAACCACCCAAAGGAGGAGACATTGGACAGTCAGTGGACATCTCTGCAGgCTCCCAATCCCGGGCTGGACTTCTTCAGCAGCCCAGCTCTGTCTGGCTCTGGTACTCCCCCCCTGGGGTCCCTGTTCCCTGCAGTGGCCCGGCCCTCTGGCTCTGTGCCTCGGGCTGCTGTCGGGCCCTACCCTGCCACTCCCAAAAGCAGCTCCTACCAGTTTGCCAGCGCCACACACCCGGGCTCTGCGTCCGTCAACCAGGGCCTGCAAGACCTGACCATGCTGGACCTCGGGGAGCCCAGGAGCGTGCCCCCACAGTCACATGCTGGACCCATGCTTGGCCCCACACACTCCTCCCTGCTGGAGTTCCCCAGGGTCCCCAGCACGACCACAGCCCCCCTGAGTGGTGTGACAGCCCACACCCTGGCTCAGACCATGAGCTCCTCCACCCCGGGGAGCCCCCTCTTTCGCTCGCTGTCCCCCGTCCACCTACCCCCCCAGGGCAGTCCGCTGAAAGGGGTCGACTCCTCTCTGGCCAACGTCCACGTCCCTCTGGACTCCATCAAACCCAGCAAGGTCCTGCCCGTCACTGCCTATGACAAGGACGGGGTGCGTGTCCTGCTGCACTTCGCCTTGGAGTGCCCCCCCGGGCGGCCGGACGTGCTGGTGATCGTGGTGTCGATGCTCAACACCGCCCCCCTGCCCGTGAGGAACGTCGTCCTGCAGGCCGCCGTGCCCAAGTCGATGAAGGTCAAGCTGCAGCCCCCCTCCGGGACGGAACTGGCGCCCTTTAACCCCATCCTGCCCCCTGCAGCCATCACTCAAGTCATGCTCCTAGCTAACCCTTTGAAGGAGAAAGTGAGGCTGAGGTACAAGCTGATGTTCAGTCTGGGGGAGCAGCAGTGCACGGAGGTGGGAGAAGTAGACCAGTTTCCTCCAGCGGAGAAATGGGGTAACCTATAGCCCCCCACAAGGGACAGGACAGGGTGCCCCGATGTGTCGCGGCAGAGATCCTTACTTAGCTGAGAGAGAAATCAACGCGCTGATGAATGTTTTCTTGGGTAGGCAAGTGCTATTAACGTTACAGAAACCATTCTCCACAAACCTGAGTGtcttatcttttttgtttttgtttgattgttgtcTCTTACACTCCCTGCAACTCTTAACACCCCTCTGCCCTGGGCTGTTGTTTAAAAGACTGCACTTTACCTGACCTTAGTTTACTggaag

Function

GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013322 True 2474 mRNA 0.58 15 28199809 28208595

Neighbor

gene id symbol gene type direction distance location
AMCG00013321 mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710 coding upstream 2866 28190435 ~ 28196943 (+)
AMCG00013315 NA coding upstream 20008 28172751 ~ 28179801 (+)
AMCG00013316 grb2,grb2b,LOC105013161,LOC106523871,LOC107719324 coding upstream 33033 28161330 ~ 28166776 (+)
AMCG00013312 NA coding upstream 246466 27952383 ~ 27953343 (+)
AMCG00013311 NA coding upstream 252974 27936413 ~ 27946835 (+)
AMCG00013320 sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670 coding downstream 10471 28219066 ~ 28224436 (+)
AMCG00013324 NA coding downstream 18974 28227569 ~ 28234482 (+)
AMCG00013323 NA coding downstream 28188 28236783 ~ 28254407 (+)
AMCG00013328 NA coding downstream 94758 28303353 ~ 28305608 (+)
AMCG00013327 NA coding downstream 114314 28322909 ~ 28343487 (+)
G43438 NA non-coding upstream 782022 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1189158 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1269556 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1414248 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2355215 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 181094 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 529528 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 941383 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 948104 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 968456 29177051 ~ 29178266 (+)
AMCG00013317 NA other upstream 127010 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 263871 27928708 ~ 27935938 (+)
G43476 NA other upstream 608991 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 784523 27385665 ~ 27415286 (+)
G43434 NA other upstream 1041088 27158302 ~ 27158721 (+)
G43682 NA other downstream 275678 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 467947 28676542 ~ 28686138 (+)
G43802 NA other downstream 895694 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1432028 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1677167 29885762 ~ 29928697 (+)

Expression


Co-expression Network