AMCG00013323


Basic Information

Item Value
gene id AMCG00013323
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28236783 ~ 28254407 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013323
TTGAATATAATAAACTGCTGGTGCTGAAGTGTTCATGTTGTTAATCTAGTAGGCGGCTTCAGAATTCCCCTTCAGATCGAAAGTGAAAGTATTTGTAACGTTCACTTCTTGTTTTGGTTCTCTCGGGATGTGCACGGATAgcattctggaaaaaaacataaagttCAATTATAAACTGCTGTCAGCTGGACTCGGGTTTATGTTGAAACCGTGAACACTGAAATATGGCTCCAGCTGCCTGGCAATTCTGTGTGACTTTTATCGCTGTCATCAGATTATCGTTCTCTACTGACCATCTGTTGAAAATGGAGTGCAAGGGTCAACACAAATCTGTGTTTGGCCAAGATACAAAACTGGAGTGCTTTTTGAAGTCCCCCTATAATGAATTTACAATCATAAAGCTGCTGTGGAAGAAGGAGAACACAGAAGATGCACTGTTTAAGTTTTTCTCAGGAATGGCAGATCCAGGCAATGATCCCCGATTTGAACGTTTACAACCGGGGAACTGCACGGACGTCTCGTTGTTGGTGAAAAACACCAAGATAACAGACGAAGGGAAATACACATGCCTTGCAGTGACTGACCGTGGCCATGCCATTGCGGAAACAATCCTATCAGTCTCAGCTCCGTACACAAACCCCGTCATGAGCTCAATGCCAGCAAAGAACATCAGAGACGACATGACGGTGACGATGTTCTGTAACGTGTCGGGGGGCTACCCAGAGGGACGCATCCAGTGGTATGACGAGTATAACACGGACTGGACCCGGAGCTCAGAGACCCAATCCGTGCAAACCAAGGACAGACGGTACAACTTGACCAGCACATTCACTGTGACAGCCTCGTCTACAACCAAGCAGTACAGTTGCTCTGTTTTCAACTCGGATGACCTCAAAGAAGGAGAACAAGAATTGAATCTCATGtttgGGCCTGACAAGCAAGAAGGAGATAGCAACACCACCGCAGTGGCCGCAGTGTTCGTGGTGGTGGGAGCTCTGGCCAGCGGGATTTTGGTCTTGGCATTACTTCGGCGCAGGAGATTAAGAGGTCCACCCCTTTCACATCCAGTGGAGACAGAGGAACCATTAGAAAGGCTCAGAGTCGAAGAGATGGCAGTGAGGGCAGTGCTGTCAGTGTACGTTCTGTGTGCAGTTGCGTCTGCATTTCTAGTGTctcagtctcctctgttcctggAAGCgaagctgggagacactgtgaaGATCACTTGCTCCACAACCCTGAAGAGTCCTGATGGCATGTTTTTGAGAAGGATATTCTATAAAGAAGGTCAGGTGCTTTACGTCGCCAATAATGACATGAAATTGACACCAGCGGAAGACTACAAAGAGCGAGTGAAGGTTACCGGGAAATTGAACAATATCACCCTCACATTCAGCGCATTGAGGGAGGACGACTCTGGGGTGTACTTCTGTCACTACAGACACCTCAATATGGAAACGGCACAAATGGAGGAATTTAAAAGCAGCTGCACTCTGATTCTGGTCAAAGGTGCTGTGCAGACTGGGCCGTGTGAGCAGAATAGAGCCCAGCATCTGAGTCCCACCCTGACGCTCATCACAGCTCTGTCCGCTGCCTTCATGCTCCTGCTCCATCTCTATCTGTCTGGTCCCAAGGTTGACGTCGCTCCAGGTGAACAATGCACACAAAGCAAGCCCCTGGAGTTGACCCCCACCCTGATGCTCATCACCGCCCTGTCAGCAGCCTCCGTGTTCCTGCTGTGTGTCATGGCCATCATTATCTGGCAGTTCCCCAAGATTAAGAAATTCTTTGCAAAGCGCCAGTCTCCAAGGCAGAGGAAATCCCACGAAATGGTGTATGAGGACATGCGGCAACACAAATAACAGGATTTTGCACCAGCGAGTGTGTGGGCGTGAACAAACACGGCAGAAGActgtaaaaataacacacagtgaTGGCAAGCTATACTGGTGCTATACTGTACAGTGAAAAAGCTTGAGCGATGGTTTAGAGTCATTATGGTACTTCAGACAAACTGTTCATGAAATCCTTCTATGTCTGTACATACAAATaacattcatataatttatGGTGTTTGACAGAAATATTGAAgtatatggttttatttttctcttcaaatGAGTAACAGGAATTTCCTTGAGTCTTTCTTCTCACACATGGCTGAAATGATGAAGATCAAGGTACTGCCTCTGCACTCTGCCCTCCTCCAAAGGCAAACAGCGGGCCCTCAGACAGACAGTAGCAGGGCCCCCAGTATGCTGTTACAAATACTTACAAATAAGTCACCACCTTTAGCACAGGTATGTCACAGTGAGCGGGAAGAGATAATGAGTCACAGTCTAATACTGGAGGCTTTATGTTTTTCACATTGGTGTGGTTTTCTGTGCTGGCTGTCTATTAGACCCGTCTACTGACCGAGTTGTGGTTGTACTGCTTTGTGTGTTGTATAGAAGTTGCACTGACTTGCTTTGTGTCGTATTCCTTGCTTTTTGAGAGGCCCACTAGGCACtttttctgatccggatcaaatgcatcggtacatTTGTGGATCAGTGGTATCGCGTCTACACTGCCATCAACTGTCAGCCGCTGCAAGGGTCTTCGCATGCACACTAGCACGGATGTCCAAACTCACTGATATGAATTagtctaacaagtaaaaccaactcACTTGACTATTTTTTCGAGaccgaagcattttaaatataaatacatttatatatttatattctaacATGAAATGACAAAGCATTTAGTGctatttttaacaatgttttatttataataagggAAGTAGGTAAGTGTGCTTTTATCTGCTCCACTAATGCAAAGGCTGCTTGTCTGCTGTCAGGACCATGTGCTACAAATGCTTTTGAttcggatcagaaatggcagtgtaaacgcaccTATGGTTCTGGAACGCcacattcctttttttgtagatttgttttgaaGCTCACATTTACAGACTGAAGACAAAGTGCAGGGCAACGATGTTTGACCGGTGTGGGGCATTTAGGAGGTATAAGAAGATTcttataaaatcacatttacttGACTAACCTCTGTGCAGATGAGAAAACCTAACTCTTTTAGGCTTCAATTATGAGGTTTGaactatttatgtatataaagctgattcattttcatacctttttattttggttataaataaatgtgtgtacatataatGATTTCCTGTTTATGTTACAATATTGATCCaacc

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013323 True 3226 mRNA 0.44 12 28236783 28254407

Neighbor

gene id symbol gene type direction distance location
AMCG00013324 NA coding upstream 2301 28227569 ~ 28234482 (+)
AMCG00013320 sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670 coding upstream 12347 28219066 ~ 28224436 (+)
AMCG00013322 NA coding upstream 28188 28199809 ~ 28208595 (+)
AMCG00013321 mif4gd,mif4gdb,LOC106606581,LOC107553652,LOC106601806,LOC107570710 coding upstream 39840 28190435 ~ 28196943 (+)
AMCG00013315 NA coding upstream 56982 28172751 ~ 28179801 (+)
AMCG00013328 NA coding downstream 48946 28303353 ~ 28305608 (+)
AMCG00013327 NA coding downstream 68502 28322909 ~ 28343487 (+)
AMCG00013329 tnrc6c,LOC107724432 coding downstream 209955 28464362 ~ 28483978 (+)
AMCG00013330 LOC108424797 coding downstream 311691 28566098 ~ 28582254 (+)
AMCG00013335 NA coding downstream 345496 28599903 ~ 28606883 (+)
G43438 NA non-coding upstream 818996 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1226132 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1306530 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1451222 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2392189 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 135282 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 483716 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 895571 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 902292 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 922644 29177051 ~ 29178266 (+)
AMCG00013317 NA other upstream 163984 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 300845 27928708 ~ 27935938 (+)
G43476 NA other upstream 645965 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 821497 27385665 ~ 27415286 (+)
G43434 NA other upstream 1078062 27158302 ~ 27158721 (+)
G43682 NA other downstream 229866 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 422135 28676542 ~ 28686138 (+)
G43802 NA other downstream 849882 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1386216 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1631355 29885762 ~ 29928697 (+)

Expression


Co-expression Network