AMCG00013325 (LOC107724659,LOC107579769)


Basic Information

Item Value
gene id AMCG00013325
gene name LOC107724659,LOC107579769
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28196957 ~ 28199793 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013325
AGAgcgaataataatcataatcataatcataataagatgtatatatacagctctgacacaaattaagagactactcctagttcagaaatcaatgtttagtggtctcttaattttttccttaCATTACCATTTAGGAGTAGTGAAACGTtaatataatttgcattgttCTTTAGTAGTTTTTATCGCACAAGGACATTACACTATAGTCAGTATATGCCTAATAGTTATGCATGTAATAggtgtatgttttaaatgtgttaaaatcgGATATAAgaatattgattattttctttacaatggTAGTTATCTATTTTAATGTAACTGAATATGACATATTGTAGACTACACTTATTTTCAGTGAGGTAAATCGAAACGAGAAACGACCATCAAacgtttatttaaaataagtaaagaaaTATTAACAACTCAGCTATGCATCTACTTTTCTGATCCAAACCCACATCATTACGGTTATTTTCCACGCAGGCAGATTGTTGGACAGCCTTTTCTGAGGTCCTTCAAGCCCAATCCAAGATGGCTGCTTCCATAGCGAAATTATTGAGACCCTGGACGCCGGgGGTGTTTCAGGTGAGATGGAGCAGGTACAACCCCTATTACCTGGAGCCCGAGGCCGACAAGGAGAAGTACCGCATCCCGGAGTCCGAGCTCTCCGAGGAGGACAGAGAGCAGCGGAAGCTCAAAGCGTTGAAGCCGATCAAGGCGGCTGCGCCTGACCTCAACAGCTCCGTCTTCAACGACCCTCAGATCAGTAAATTTGTGAACATGATGATGCAGGATGGGAATAAGGTGTTAGCCAGGTCTGTTATAACCCAGACACTGGAAAGTATCAAGAGAAAGCAGGTAGAGAGGTACCACAAAGCCCCAGATGCCCAAAAGGAGGAAATTGAGTGCAACCCGTACACCATCTTCCATAAAGCTCTGGAGAACTGCAAGCCTGTCATCGGTATGGTCAGCGTTCAGAAGGGGGGCAAGTACTATCAGGTGCCGACGCCTCTGACAGAAAACAGGCAACGCTTCCTGGCCATGAAGTGGCTGATCACAGAGTGCCGGGACAACAAGCACCGGCGCACACACATGTACGAGAAGCTGTCCCAGGAGCTGCTGGCCGCCTTCGCCAACGAGGGCAACGTGGTCAAGAGGAAACACGACCTGCACAAGATGGCCGAGGCCAACAGAGCCTTCGCACACTACCGCTGGTGGTAGCATGTGCCCTGGGGAACGGACACTCGGGACTATTACGCAAAGAAGTCGTACAGTAAGACAAGATGAGTTTCTGCAGTAATTTCCATTAGCAGCCTTCTGGTGGGGCTGCCTCCCTCCTGTCTGGATTGGAGGACTCAGCCCGGACTTTTCCAAGATCTTCTGTTCTTGTTTGCACGTGGAGACATAGCACTGGTGTCTACAGCCACATTTCCATGCTCTATGGTTTGGTCTACAATATAATGGAAAATTACTGAGAACTTTGCTCAACAGAAACCAGTGAAAAGATCCAATAAATGTTTCCACACCTTGACATGCAATGCTCCTCTCTGtgcttttgaaatatgtattcctTCACATGCACACATCCCGTGCTTTTAAGGTTTGAATGTAAATACCTATAATTTGATGCATttcctttgcatttttaaaggttATTAAATAATAGAATACCA

Function

NR:

description
PREDICTED: 28S ribosomal protein S7, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process

KEGG:

id description
K02992 RP-S7, MRPS7, rpsG; small subunit ribosomal protein S7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013325 True 1676 mRNA 0.44 5 28196957 28199793

Neighbor

gene id symbol gene type direction distance location
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding downstream 66825 28128668 ~ 28130132 (-)
AMCG00013318 NA coding downstream 118255 28074541 ~ 28078702 (-)
AMCG00013313 stx8 coding downstream 269630 27917922 ~ 27927327 (-)
AMCG00013314 NA coding downstream 296068 27892338 ~ 27900889 (-)
AMCG00013306 NA coding downstream 408489 27774263 ~ 27788468 (-)
AMCG00013326 nup85,LOC106601803 coding upstream 10610 28210403 ~ 28218058 (-)
AMCG00013331 NA coding upstream 293153 28492946 ~ 28495999 (-)
AMCG00013332 NA coding upstream 302229 28502022 ~ 28521437 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding upstream 572140 28771933 ~ 28777474 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding upstream 774897 28974690 ~ 28989005 (-)
G43593 NA non-coding downstream 134504 28062249 ~ 28062453 (-)
G43592 LOC105901958,LOC107704008 non-coding downstream 135788 28060844 ~ 28061169 (-)
G43590 NA non-coding downstream 230724 27966012 ~ 27966233 (-)
G43518 NA non-coding downstream 479914 27714039 ~ 27717043 (-)
G43435 NA non-coding downstream 1038228 27158301 ~ 27158729 (-)
G43626 NA non-coding upstream 29617 28229410 ~ 28234706 (-)
G43670 NA non-coding upstream 143484 28343277 ~ 28347474 (-)
G43685 NA non-coding upstream 270541 28470334 ~ 28470537 (-)
G43686 NA non-coding upstream 275315 28475108 ~ 28475326 (-)
G43687 NA non-coding upstream 275663 28475456 ~ 28476100 (-)
G43594 NA other downstream 124170 28068213 ~ 28072787 (-)
G43473 NA other downstream 627806 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 903884 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1639633 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1712543 26479611 ~ 26484414 (-)
G43684 NA other upstream 267519 28467312 ~ 28467906 (-)
G43869 NA other upstream 1053603 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1726590 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1840412 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 1880821 30080614 ~ 30083441 (-)

Expression


Co-expression Network