AMCG00013327


Basic Information

Item Value
gene id AMCG00013327
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28322909 ~ 28343487 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013327
ATGTGCAGCGGAGATGCACAGGAATTTGGCGGTGGGAGCCCAGAGTTCACATTCCACTCGAACCCGAAGCGCTGCGCAGTTGGCAGCCTGGCTTGGAGCTCGAGCGCAGACAGCGAGAGCTTGGTGGCAGCCTTGTGGCCGCCTGGTGCAGGAAGGTCAGAGGTCATTCCCAGCTACACAAGCACCATGGCAGACCCCTCCAGAGATCCTGGCGCCAGGCCGCCCCCCCCAGTGCGCAGTGACAAGCCCGGGGCTGACTTCAGCTATGTGGGCATCGATGCCATCCTGGAGCAGATGAGAAGGAAGGCGATGAAGCAGGGCTTTGAGCTCAACATCATGGttgtgggtgaGTCAGAGCGGGTTGGGCAAATCCACGCTGATGAACACCCTCTTCAAGTCCAAGACATCGAGGAGAAGGGCGTGCGGATGAAGCTGACGGTCATCGACACTCCCGGCTTTGGGGACCAGATCAATAATGAGAACTGCCTTCGACCTCTGGACGTGGAGTTCATGAGACGTCTCAGTAAAGTGGTCAACATCGTGCCCGTCATCGCGAAAGCTGACACACTAACGCTAGAAGAGAGAGACTTCTTCAAACAAAAGATCAGGGAAGAGCTGCGGGCCAATGGCATCGATGTGTATCCTCAGAAGGAGTTTGACGAGGACGCAGAGGACAGGATGATCAACGAGAAGATACGGGAGATGATCCCTTTCGCTGTGGTAGGGAGTGACCAGGAGTACCAAGTGAACGGCAGGAGGCTTCTGGGAAGGAAGACAAAATGGGGCACCATAGAAGTTGAGAACATTGCACACTGTGAGTTTGCCTACTTGCGAGACCTGCTCATAAGAACACATATGCAGAACATCAAGGATATCACCAGCAGCATCCTGTATGAGGCGTACCGCGTCCGGAGGCTGAACGAGAGCAACATGCACGCAAACGGCGTCTCCGACCATGACGTCACCTCCAACGAGATGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013327 True 981 mRNA 0.55 10 28322909 28343487

Neighbor

gene id symbol gene type direction distance location
AMCG00013328 NA coding upstream 17301 28303353 ~ 28305608 (+)
AMCG00013323 NA coding upstream 68502 28236783 ~ 28254407 (+)
AMCG00013324 NA coding upstream 88427 28227569 ~ 28234482 (+)
AMCG00013320 sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670 coding upstream 98473 28219066 ~ 28224436 (+)
AMCG00013322 NA coding upstream 114314 28199809 ~ 28208595 (+)
AMCG00013329 tnrc6c,LOC107724432 coding downstream 120875 28464362 ~ 28483978 (+)
AMCG00013330 LOC108424797 coding downstream 222611 28566098 ~ 28582254 (+)
AMCG00013335 NA coding downstream 256416 28599903 ~ 28606883 (+)
AMCG00013334 NA coding downstream 266618 28610105 ~ 28610395 (+)
AMCG00013333 NA coding downstream 267816 28611303 ~ 28623511 (+)
G43438 NA non-coding upstream 905122 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1312258 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1392656 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1537348 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2478315 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 46202 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 394636 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 806491 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 813212 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 833564 29177051 ~ 29178266 (+)
AMCG00013317 NA other upstream 250110 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 386971 27928708 ~ 27935938 (+)
G43476 NA other upstream 732091 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 907623 27385665 ~ 27415286 (+)
G43434 NA other upstream 1164188 27158302 ~ 27158721 (+)
G43682 NA other downstream 140786 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 333055 28676542 ~ 28686138 (+)
G43802 NA other downstream 760802 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1297136 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1542275 29885762 ~ 29928697 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_05227862_05278522 SEPT9A coding CI01000069 null 5227862 ~ 5278522 (-)