AMCG00013329 (tnrc6c,LOC107724432)


Basic Information

Item Value
gene id AMCG00013329
gene name tnrc6c,LOC107724432
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28464362 ~ 28483978 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013329
ATGGAGACTAATGGACTTCTGCAGGCGGTGGGATGGGGCTGGAATGCACTGGCCTCCCCTGGACCTGCACTGATCTCCACCGTGCAGGTGCACTGTAGGAACCCGTTAAAGCCGCCCCACCAGAGTGGCCTGGGAACCCAGTATGAGAATCCCCACTGGGGACCCCAGCCCACCAGTCGGAGTGAATCGAACAGCAGCAGCTGGGATCAAGTGATCATCGACGAGAGCGACACCGAGGCGTGGCCTTCCATTTCCCGCAGCGACAGCCACGCCCCCCCAGAATGCACCACGGACACTGACTGTGCCACCGagatcagcagcagcagcagtagcagcatgAGCATGGCCACGGGGGGCCAGCAGGGCCACTTCCAGGGCCACCACCCCAGCAGCAAAACCAGCGCCAACCACTCGGGAAACATGGTTTCCAACCAGGGCGGGGCCAGCCGTGGCTGGGGCTCCGGCCCCACCCACTGCCCCTCTGCCATCGGAGGAGAGGGGAAGACCGACAGCATGTCAGTGGGAGGGAGGGGCCAGCCCTGCTGGAGCACCCCCAACTTTAACTTGAACCTGAACCCTAACGCCAACCCCGCTGCCTGGCCTGTGTTGGGCCACGAGGGGACTGGCATGGGGGGCGGGGGCCCAGGGGGTAATaaccctcctcctccccccaacCTCTGCACCCCAGCGGGTGCCCCGCCGGCccagggcagcagcagcggtGGCAATATGGGCAGCGCCAATGGAAACCTTGCAGGGGGCGGGGGCAGCAGCGCCTGGGGGGGTCTGCTCCCCCCCGACGCCACCGAGTCCCGCCCCTCCCCGTCCACGAATGTGTCTTTCAGCGTCGAACCTCAGAACCTTAACACTGACGGACCAAATAACACTAAACAGGAGCCCCTCAGCCCCATCCATGGCCTCCCCAGCTGGGGTGCTGTCTCTGTCGGCATGGGGTCCCTCGTGCAGCCCCCCACTGGAGCCTCGCAGGTCAACGGGGAGGGGGGCTCGGTTTGGGGCAGCGGAGATGCCAAGTCAGGGTGCTCCAAGGATTCCGCCTGGGATTCGGGGCCACCCAGCAGCCCGGGCCTCCTCTCTGCCTGGGGCCGCCCCGGGAACGGAGGCGGCGGTGGGGGGGGTGCGGGGGCCTGGGTACGGGCCGGTGGTGGAGATTGGGGCAAGCATTCCAGCGAGGCCAAAGGGTGGGATGCGGCGGGCACCCCCCCCCAGGAGCAGCTTCCCTCCTGGACTCGTGCAACCAACGCCCCAGCCAGTGAGGGCAGCAACGACAGTCTGGAGGGGCGGTCCCGCCGGAGGGAGCGGTCGTCCAGCGAGCATGAAGCGGCCCCTCCCCTGCCCAGGCAAGACCTGGACCCCCGAGTCCTGTGCAACACTGGCTGGGGCCAGACCCCGGTCCGACAGCACACCATGTGGGAGATCGAAGAGGTTGCACGGGCCGACCGCAAGAACGACACCGGCACCGAAGCCTGGAGCTCGACCTCCGCCTCGTCCTCCTCGACTGGAGCCCAGCTGGCCCCTGGAGGTGCCAACCCAAACCCCAGCGCTGCTCAGATGTCAAACTCAGGTGGCAAAGGCGAAGGGTCCAATACCTCGGCGGCTCCGGGCTGGGGGAACCCCACCCCCAGCCACATCACACCAGCGCCGGGCCAGTCCAGCTCCGGCTGGGGTGAGCAGCCCAGCGTCAAGAAAGCCCCTAACGGGTCTGGAGGCTGGGGAGATGCCCCCGCCGGCGGCAACAATGCCAACATCCCCAAGACTGGGCTGTCCTGGGGGTCTGAGGAGAAGTCCCCCAGCTGGGACGAGCCCCCTGCCAAGCCCAAATCTCAGAACTGGGGAGAGGCGCCCAAACCTTCCCACGGTGGCTGGGGCGGGAGTGGAGGAGCTGGGGGTGGCGGAGCTGGAGGAGACTGGGGGGGGGAGCACGGTGAAGGGAAGAAGAACGGCCCCACTACCACTCCCTGGGAAGGGGAAGGAGGGTGGAAGGAGAACCAGCGCAACTGGGGGAAGCCCAACCccggggtggggggtggctgGGGGGAGGCACAGCGACCCAGTGCTCCGTtggggcaggggtgggggggcaagcCCCAGGATGCCAACACCGCTAATAGCAGCGGCACAGGAGGTGGCGTGGGAAACTGGGGCGGCGCTGGCTCGGTCAAGCAGAGTGGCTCGggctggggagggggtggtggggcaggaggaggaggagttggAGGAGGGGGTAGTGGGGGAGGAGTGgtaggaggagggggaggaggaccTGGAGGACCTGGAGGAGCAGGAGGGCCAGTAAAACAGGAGCCTGGAGGGGAGCCCACCGGGTGGGAAGAGCCCTCCCCTCCCTCGATCCGGCGCAAGATGGAGATTGACGACGGTACCTCAGCTTGGGGTGACCCGAGCTCCTGCAACAAGACTGTCAACATGTGGGACAGGAACAACCCTGTGGTCCAGAGCAGCCCGGCAcccaacaacagcagcagcagcagcaacaacaacccCGCTGCCcccagcaacaacaacagcaaccaccaccaccatcaccaccaccaccatcaccaccacccgCACCACGGCCAGCCTCCAGGCCAGAACCATGGCCACACGGCCGCCAACAATGCCAACAACAACAGCGCGTCCGAGGCGGCAGCACCTCACCAAACAAGTGCCCCGCAGAACCGGTCCCCCCTCGTCGGGCCAGCTTGGGGAGAGCTGCCCAGCGTCCACTCCAAGCCTGAGCCATCGTGGGGCGAGCCGGCCTCTCCCGCCCCCAACGTGGACAACGGCACCTCTGCCTGGGGAAAGCCCCCGGGCAGCTGCGGGGGCTGGGGGGACAACTCATCTGATCCCGCAGGGCCCTACGGCAGGGGCAATGGTCCTCCAGGAACTGCCCCCTGCAAGCCAGCCTCCAAATCTATGCAAGATGGTTGGGGAGGCAGTGCGGACGAGATGAGCATGTCTGCAGGGCagtgggagcaggaggagggggACATGTGGAACAGCGCCGCCTCGCAGGAGAGCAACTCGTCCTGCAACTCCTGGGGCAACGCGCCCAAGAAGGGACAGCAAAAGACTATGAAGGTGCCCAGCAAGCAGGACGATGCCTGGATCATGAGCCGTCTGATCAAACAGCTCACCGATATGGGCTTTCCGcgAGATCCTGCTGAGGAGGCTCTGAAGAGCAACAACATGAACCTGGACCAGGCGATGAGCGCCCTGTTGGAAAAGAAGACAGAACTGGACAAGCGGGGGATGGGAATTTCCGACTATAACAACGGCCTGGTCTCCAAACCGCTGGGCTGTCGACCCCCGGCAATCTCCAAAGAGTCTTCCTCAGACCGCCCCTCCTACCTGGACAAGGACGGCGGCCTGGTGGAAGACGCCCCAACCTCACCGTTTTTGCCTTCTCCCAGCCTGAAGCTCCCCCTGTCCAGCAGTGCCCTCCCCAACCAGGCCCTGGGGGGGGTCTCTTCGGGGCTGGCCATGCAAAACTTGAACTCCAACAGGCAGATGCAGAGCGCAATGTTCGGCAGTAGCGGAGCAGCACAAGCCAGGGCCGGGCAGCAGCAGCCACCTCCCCCCCAGCCATCAGTGCCGCCTCTCAACTCCTCCCAGCCTAGTCTTCGTGCTCAAGTGCCTCAGTTTCTCTCCCCTCAGGTTCAAGCACAGCTCTTGCAGTTTGCAGCAAAAAACATTGGTCTGAACCCTGCACTTTTAACCTCACCAATAAACCCTCAACACATGACCCTGTTGAACCAACTCTACCAACTGCAACTGGCGTACCAGCGTTTACAACTCCAGCAGCAGATGTTGCAAACTCAGCGCAACGTTTCTGGCCCCATCAGACAACAAGAGCAGCAAGTTGCACGTACAATCAATAACATGCAGCAGCAAATCCAACAGCACCAGCGCCAGCTGGCCCAGGCCCTGCTtatgaagcagcagcagccgcctCCTCACCCCAGCCTGCACCCCGGCGCCGGCAAATCAGCCCTGGACAGctacccaccccacccccaggcCCAAGGCCTCAGTGACCTGCAGACCAAAGAGCAGCAGTCTTCTCCCAACTCCTACTCTCCGTACCCTCTCTCTGGACTGAATCCAAACATGAATGTAAACAGTATGGATGTGAGTGGTGGTCTGTCCATGAAGGACACGTCTCAGTCTCAGTCCCGCCTGCCGCAGTGGACACACCCCAACTCCATGGAGAATCTCTCGGGCAACTCCTCGCCACTGGAAGCCAACCTCAGCAAGCACGGCGTTTTCTCGGCAGGTTCCAGCCTTGGCCCCCCGGGGAAGCCCTCCATGGAGGACTCCTACAGCCACTACAATCTGATCTCCAGCTCCGATTCTCCCGCCAGCCCGCTTGTGGCTCCGGACAGCTGGGCCCAAGGCAAATCCTCCAACGACAAGATCTCCAACGGCACCAACATCAACTGGCCACCAGAGTTTTGCCCTGGAGTGCCCTGGAAAGGACTGCAAAACATCGACCCAGAAACGGATCCCAACGTGACTCCGGGAAGTGTCCCCAGCGGCCCCACCATCAACACCAACATCCAGGACGTGAACCGCTATCTGCTCAGAGACCGCAGTGGAGGCTCATCCCCAACGTCTTCTCAGAACGGCGCGCTGCCTCCCTCCGACGCCTGGCCAGTCAGTGCCTACACTAGCTCTTTCAATATGCCATCATCAGCGACTAATACTGCAGGTAAACTCTCGGACATGAAGTCCACCTGGTCTCCCGGCCCCATCTCCCACACCCAGGCCTCGCTATCTCACGAGCTGTGGAAAGTGCCGCAAGGCCCCCGAAACACTACGGCTCCCACCCGGCCCCCTCCTGGCCTTACCAACACCAAGCCGTCCTCGACGTGGGGCGGCAGCGCGCTGGGCCTGGTGCCCGGCTGGAGCAGCTCTTACTCGGGTACCACCTGGAGCACGGACAGCTCGGCCAGGACGAGCAGCTGGCTGGTGCTGAGGAACCTCACCCCCCAGATCGACGGTTCGACGCTGCGGACGCTGTGCATGCAGCACGGGCCTCTCATTACATTCCACCTGAACCTGACCCAAGGCAATGCCGTCGTACGCTACAGCTCCAAGGAGGAGGCGGCCAAAGCCCAGAAGTCCTTGCACATGTGTGTGCTGGGTAACACGACCATCCTCGCCGAGTTTGCCGGGGAGGAGGAAGTGAACCGATTCTTTGCACAAGGTCAGTCTCTGACGCCCACCACCAGCTGGCAGGCCAACCCAGGCACCAATCAGACCCggctggggggggcgggggcatCGCACGGCATGGGCCACTGGAACAGCAGCGGGCTGGGGGGCGCCAAGGCCGGCAGCGACCTGCTGTGGGGGGGGGTCCCGCAGTACTCGAGCTTGTGGGGCCCGCCCAGTGGAGAGGACGCCCGGGTCATCGGGAGCCCCACCCCCATCAACACGCTGCTGCCTGGGGACCTGCTGAGCGGAGAGTCCATGTAGGATTACAA

Function

symbol description
tnrc6c Predicted to enable RNA binding activity. Involved in gene silencing by miRNA; positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to be located in cytosol. Predicted to be active in P-body and nucleoplasm.

NR:

description
PREDICTED: trinucleotide repeat-containing gene 6C protein isoform X1

GO: NA

KEGG:

id description
K18412 TNRC6, GW182; trinucleotide repeat-containing gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013329 True 5507 mRNA 0.64 20 28464362 28483978

Neighbor

gene id symbol gene type direction distance location
AMCG00013327 NA coding upstream 120875 28322909 ~ 28343487 (+)
AMCG00013328 NA coding upstream 158754 28303353 ~ 28305608 (+)
AMCG00013323 NA coding upstream 209955 28236783 ~ 28254407 (+)
AMCG00013324 NA coding upstream 229880 28227569 ~ 28234482 (+)
AMCG00013320 sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670 coding upstream 239926 28219066 ~ 28224436 (+)
AMCG00013330 LOC108424797 coding downstream 82120 28566098 ~ 28582254 (+)
AMCG00013335 NA coding downstream 115925 28599903 ~ 28606883 (+)
AMCG00013334 NA coding downstream 126127 28610105 ~ 28610395 (+)
AMCG00013333 NA coding downstream 127325 28611303 ~ 28623511 (+)
AMCG00013337 NA coding downstream 220069 28704047 ~ 28716412 (+)
G43673 NA non-coding upstream 74402 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1046575 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1453711 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1534109 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1678801 26784953 ~ 26785561 (+)
G43712 NA non-coding downstream 254145 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 666000 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 672721 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 693073 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 695120 29179098 ~ 29202721 (+)
AMCG00013317 NA other upstream 391563 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 528424 27928708 ~ 27935938 (+)
G43476 NA other upstream 873544 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 1049076 27385665 ~ 27415286 (+)
G43434 NA other upstream 1305641 27158302 ~ 27158721 (+)
G43682 NA other downstream 295 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 192564 28676542 ~ 28686138 (+)
G43802 NA other downstream 620311 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1156645 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1401784 29885762 ~ 29928697 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_05100248_05121420 TNRC6C1, TNRC6C coding CI01000069 null 5100067 ~ 5121420 (-)