AMCG00013330 (LOC108424797)


Basic Information

Item Value
gene id AMCG00013330
gene name LOC108424797
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28566098 ~ 28582254 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013330
TTGGGAGGCCTGGAGTCCCGCGGGGTCCTGCGCAAGATCAGTGACATGCTGGAGGTCATCATGAAGAGGATAGACGTGCTGTCCAAGATGGGCAACACCAGCGACTCCCGGAGACTGGACGAGCTGAGCTCCGCCATCAACAGGTTCCAGCCGGCCGGCCTGGTGGAGCGGATCCAGGCCATCGCCCAGAACGTGTCCAACATGGCCGTGAAGGTGGAGCAGATCCTGCAGAACAGCCTGGCAGCCGGCCGAGTCAGAGACGCTGTGTCGGGACAGTGCGAGATTCCCAAGGACCCCAGGTTCCCAGACTGCCCGAGCAAAGTGGACTGGATGCGCGCTCGTTGGACCTCAGACCCGTGCTACGCCTTCTACGGGGTGGATGGCTCGGACTGCTCCTTCCTCATCTATCTCAGCGAGGTGGAGTGGTTCTGCCCCCCGCTGTCCTGGAGGAACCACACCAGCACCCCCACATACAAGCCCCGCGGCCGGAGGCAGGCAGCTTTCCGCACCGACATCACGGCCCTGCTGGACCAGGTGGGAACCGGGAAGGAGTCTCTGAGCTTCATGAAGAGGAGGATCCGCAGGCTGGCGTCCCAGTGGGGCACGGCTGCCCATCGGCTGGACCACAAACTCCGCAGGCCTTGGAGGGATCAGAAGAAGATCCTGGTCCATGTAGGTTTCCTGACCGAAGAGTCGGGTGACGTTTTCAGCCCCAAGGTGCTGAAGGGGGGGCCCCTGGGAGAAATGGTGCAGTGGGCGGATATCCTCACTGCTCTCTACGTCCTGGGACACAACCTGAAGATCTCCGTCTCGGTCAAGGAGCTGCAGGGGACGATGAGCCTGCGGGAGGGGAACGTGTGTCTCCATCACGTGTCCTCTGCCACCATCAGCCCCCTTTCCACGGGACCCCGAGCTCGACCTTGTCACTCATCCCTTCCCTAG

Function

NR:

description
PREDICTED: alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013330 True 942 mRNA 0.63 7 28566098 28582254

Neighbor

gene id symbol gene type direction distance location
AMCG00013329 tnrc6c,LOC107724432 coding upstream 82120 28464362 ~ 28483978 (+)
AMCG00013327 NA coding upstream 222611 28322909 ~ 28343487 (+)
AMCG00013328 NA coding upstream 260490 28303353 ~ 28305608 (+)
AMCG00013323 NA coding upstream 311691 28236783 ~ 28254407 (+)
AMCG00013324 NA coding upstream 331616 28227569 ~ 28234482 (+)
AMCG00013335 NA coding downstream 17649 28599903 ~ 28606883 (+)
AMCG00013334 NA coding downstream 27851 28610105 ~ 28610395 (+)
AMCG00013333 NA coding downstream 29049 28611303 ~ 28623511 (+)
AMCG00013337 NA coding downstream 121793 28704047 ~ 28716412 (+)
AMCG00013338 NA coding downstream 145319 28727573 ~ 28733671 (+)
G43673 NA non-coding upstream 176138 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1148311 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1555447 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1635845 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1780537 26784953 ~ 26785561 (+)
G43712 NA non-coding downstream 155869 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 567724 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 574445 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 594797 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 596844 29179098 ~ 29202721 (+)
G43682 NA other upstream 77315 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 493299 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 630160 27928708 ~ 27935938 (+)
G43476 NA other upstream 975280 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 1150812 27385665 ~ 27415286 (+)
AMCG00013336 NA other downstream 94288 28676542 ~ 28686138 (+)
G43802 NA other downstream 522035 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1058369 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1303508 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 1481126 30063380 ~ 30074748 (+)

Expression


Co-expression Network