AMCG00013332


Basic Information

Item Value
gene id AMCG00013332
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28502022 ~ 28521437 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013332
ATGCAGGGCAGTGGTCCTCCTTCGCAGGGAGAAACTGAAGACTTACATCACAGGCACAACTCCATACAGGTGCTGCCGCAAATTGCTCACGAAGACGTGGCTGGTTTTGTCAATGTCACATCAATCAAACAAGCGGAGTCGCCCGCCCACCGGGCCGCAGTGGAGCAGGTCCACCTGGTTGGGGATGGCAGGACGAGCGCGCTGAGGCCGCGGGGACAGCGCTCGAGACAGCCGGAGCGGACTGTGTTGTTAGTCTTGAAAGAAACCCTGTTAGTATTCTGTTTATTCCTGGGGTTCCTGACGGGTCTAAGCTGCAACAGGGCTGAGAGAAACAAATCCAGGATGGGAACTGCGGAGCTGCGGGTTGCTTTGTTTTGGCTCTTTGCAGTGTTCACGGTCACCTCAACCAATAATTTTGTGGACCTGGAAGTAAATGCATTGCTTCCAGAGAGATACAATACCAGCACCACACTGAACTGTCACATATCCTCAGAGATGGACCTGGGGAACATTAACATCCGTTGGAGTAAGGTAGAGAACAAAAGCATCTTGTGTGAATACACTACAGCCGGTGGGGTTGTACCACAAGCTACATGTACCTTCAGTGACCGGCAACTATCCCTGACCATTCCGCATGTAGTGCCCTCAGATGAAGGGAGATACATTTGCAAATTCAAGTCGAAAGCCGGGATGAAGTATGCAGACACAACTGTGACCCTGCCCgATCAGTACGAGAACGTCCAGTTGGAAAAATCTCTTCCGAACCTGACGTGCAGCTTTTACGGAGTTAACCGGGCTGGGGAAGTGCACTGGTTTACCGGGAACACAAACCTGACCACCAGTGAAGTCACCAGCTACAGTCAACTAACCAAAGAGGGTCTGTTCAACATCATCGGCACACACAACACCGAGGACAGTCGAGAGCCCACATACACCTGCGCCCTGTGGATCTACAGGACAGGGGCATACTTAACGAATGAGACGATCCATTTCCCCAGTGAAGTCAGAACTGTCCCAACTGGGAGCGCTGGCACTGCAGAAATGGCgccattattgttattgtacacCCTGTTTTCAATTGCTTGTTACTCGACCCTTTAGCAGAGACGCACCTGCCCCAGGTAGGTCTCCACCTGGTCAGAGGAGGAACAGAGACAACCCTGCAGaaggagaaaggaaagaaaagaggaCAAGAGCCTCCGTTGATGCTTTGTACATCTTCCATGTgatctattttttaataacttgaTAAAACCCATCAAGATTGCACAACTTCTGCTTTACACGTAGTTTCTGGCAGTGTGCAGTTTTGTCTTCAGACCCCGTCTGCACTCGGCAATCGCCCCAGGAACTCGAGtgaaaatgagtgaaaatacCATCAATTAATTTAGGATGTTGGGGGGATGGCGGCAactaaataaaagcatattatCAAAGAATGGCTTTTAGAAACAGATGAAAAGTTGCATGCCAAAGCACAATGTAATGTACAAATCCCCAAGGATTGTAAACTCCTGTTAcctattaaaatatacttagAAAACCCTG

Function

GO:

id name namespace
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013332 True 1548 mRNA 0.49 7 28502022 28521437

Neighbor

gene id symbol gene type direction distance location
AMCG00013331 NA coding downstream 6023 28492946 ~ 28495999 (-)
AMCG00013326 nup85,LOC106601803 coding downstream 283964 28210403 ~ 28218058 (-)
AMCG00013325 LOC107724659,LOC107579769 coding downstream 302229 28196957 ~ 28199793 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding downstream 371890 28128668 ~ 28130132 (-)
AMCG00013318 NA coding downstream 423320 28074541 ~ 28078702 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding upstream 250496 28771933 ~ 28777474 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding upstream 453253 28974690 ~ 28989005 (-)
AMCG00013349 LOC105417629 coding upstream 470000 28991437 ~ 28996380 (-)
AMCG00013347 aanat coding upstream 540451 29061888 ~ 29063240 (-)
AMCG00013353 NA coding upstream 577550 29098987 ~ 29114047 (-)
G43691 NA non-coding downstream 10926 28488842 ~ 28491096 (-)
G43690 NA non-coding downstream 19967 28481732 ~ 28482055 (-)
G43689 LOC107601217,LOC107724432,LOC107698663,LOC107753100 non-coding downstream 21539 28480085 ~ 28480483 (-)
G43688 NA non-coding downstream 24514 28477155 ~ 28477508 (-)
G43687 NA non-coding downstream 25922 28475456 ~ 28476100 (-)
G43714 NA non-coding upstream 155387 28676824 ~ 28767352 (-)
G43724 NA non-coding upstream 194854 28716291 ~ 28717940 (-)
G43725 NA non-coding upstream 216520 28737957 ~ 28738773 (-)
G43834 znf207,LOC107753267 non-coding upstream 593785 29115222 ~ 29117961 (-)
G43831 NA non-coding upstream 597936 29119373 ~ 29121319 (-)
G43684 NA other downstream 34116 28467312 ~ 28467906 (-)
G43594 NA other downstream 429235 28068213 ~ 28072787 (-)
G43473 NA other downstream 932871 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1208949 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1944698 26553549 ~ 26557324 (-)
G43869 NA other upstream 731959 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1404946 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1518768 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 1559177 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 1644380 30165817 ~ 30184424 (-)

Expression


Co-expression Network