AMCG00013336


Basic Information

Item Value
gene id AMCG00013336
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28676542 ~ 28686138 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013336
ATGGAGCCGCAGCGCTGGAGCCCCACGCGGGAAGCGCTCGGCCAGCCGGTGTTGCCATGGCACCCAGACCCCACCGTCCTGCGGTGCTGCACCATCGTTCTGTCTCCTCAGTCCTTCGAAATGCTCTCTCTGAACTCTGCCAGCTGGTATTTATTGGTGGGTGTCGGCAGCGGGGTGCCGTCCTCCCTGCAGAGGACGCGGAAGTGCGCCATTCGCGGCGGCGCGGAGCAGAGGACGGAGGCGCTCCCTCTCGGTGTGCAGGGCGTGCTGGCGGAAGGTAAGTACAGGTGGATGTCTCTGGAGGAGCAGGTTCCTGACCGTGCACAGAGAGTCGGCCGCATCCCCTCGCACAGCAGCCGGAAAGCGCTTCCCTGCACGACCAGCGACTGCACCGGCGGGAAGAAAGGGACCATGTCTGCTCTCCGCGGGCCGAGCGGAGTCTGA
>TU54481
CCTCCCTGCAGAGGACGCGGAAGTGCGCCATTCGCGGCGGCGCGGAGCAGAGGACGGAGGCGCTCCCTCTCGGTGTGCAGGGCGTGCTGGCGGAAGGTAGATCTATTTTGTATAACTAAGGACGAAAACTAGTTTGGCTTAACCCAGCTGACGCCCAACGTTGCGAATAACGTGTTTTCAGGTTGTTAGCTGGGGATGCAATATAGGGTATTTCCACAAGACCTGCAGGTGAGTCGCTAACGTTTTAATGCGCAAGTAAGCGGACACTGGATTGATCAGTTTAATTGATTACTGGCGCCAACGGTCTGTTACAGCCGCGTCCTCTTAGTGTCGCAATTGAAACCGCGGTGCTTTGCGTTGAACTGGTCCTTGACTCAAAAGACTCTAACCGGGGTTGGCGACTTCACTGCAAAGCTGCGAGGGGCTGTGGTGGCCTGATGAATGGTCTCCTGCCTTCCCTGCTCTCTGggagtttgtatgtttgtgcagGTCTTTGTTGCCGCGAGTGCCGGGCTGTGGGTTTGTCTGGCCACCGGGCGGCGCAGGCGCACTCCTCACCACGAGGCGAGACCTTGCTCTTGAACACTTCTCGCTGTCCGTTTGTGTCCAGGATGCTGAGGAGTTGAAGATGGTGAGATGACCTTGTTCGCGGGGTCAAGTGGAGGACTTGAGGTAAGTACAGGTGGATGTCTCTGGAGGAGCAGGTTCCTGACCGTGCACAGAGAGGTGAGGCATCTGTGTTGAGCCAAGCGGTGTCCCATCCTTGGATATTGCAGCTCCTGTGGAAACTGTGCACTGTTTTGGTCTGTGGGATGACCTTTTCAGTGCCTCTTTGACAGCAATGCTTTTATCTCTGAACAAAATGGAGAATCCTAGTAATTTCTGTAACTTGCAAGATCAAGGTGTTTTTGTGAAATGCTGTATCAAATAAA
>TU54482
CCTCCCTGCAGAGGACGCGGAAGTGCGCCATTCGCGGCGGCGCGGAGCAGAGGACGGAGGCGCTCCCTCTCGGTGTGCAGGGCGTGCTGGCGGAAGGATGCTGAGGAGTTGAAGATGGTGAGATGACCTTGTTCGCGGGGTCAAGTGGAGGACTTGAGGTAAGTACAGGTGGATGTCTCTGGAGGAGCAGGTTCCTGACCGTGCACAGAGAGGTGAGGCATCTGTGTTGAGCCAAGCGGTGTCCCATCCTTGGATATTGCAGCTCCTGTGGAAACTGTGCACTGTTTTGGTCTGTGGGATGACCTTTTCAGTGCCTCTTTGACAGCAATGCTTTTATCTCTGAACAAAATGGAGAATCCTAGTAATTTCTGTAACTTGCAAGATCAAGGTGTTTTTGTGAAATGCTGTATCAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013336 False 444 mRNA 0.66 4 28676542 28686138
TU54481 True 932 lncRNA 0.52 2 28680810 28682174
TU54482 False 418 lncRNA 0.53 3 28680810 28682174

Neighbor

gene id symbol gene type direction distance location
AMCG00013333 NA coding upstream 53031 28611303 ~ 28623511 (+)
AMCG00013334 NA coding upstream 66147 28610105 ~ 28610395 (+)
AMCG00013335 NA coding upstream 69659 28599903 ~ 28606883 (+)
AMCG00013330 LOC108424797 coding upstream 94288 28566098 ~ 28582254 (+)
AMCG00013329 tnrc6c,LOC107724432 coding upstream 192564 28464362 ~ 28483978 (+)
AMCG00013337 NA coding downstream 17909 28704047 ~ 28716412 (+)
AMCG00013338 NA coding downstream 41435 28727573 ~ 28733671 (+)
AMCG00013340 NA coding downstream 109608 28795746 ~ 28799306 (+)
AMCG00013341 rptor coding downstream 155614 28841752 ~ 28914840 (+)
AMCG00013342 NA coding downstream 232615 28918753 ~ 28936041 (+)
G43673 NA non-coding upstream 286582 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1258755 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1665891 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1746289 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1890981 26784953 ~ 26785561 (+)
G43712 NA non-coding downstream 51985 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 463840 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 470561 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 490913 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 492960 29179098 ~ 29202721 (+)
G43682 NA other upstream 187759 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 603743 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 740604 27928708 ~ 27935938 (+)
G43476 NA other upstream 1085724 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 1261256 27385665 ~ 27415286 (+)
G43802 NA other downstream 418151 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 954485 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1199624 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 1377242 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 1397506 30083644 ~ 30090117 (+)

Expression


Co-expression Network