AMCG00013338


Basic Information

Item Value
gene id AMCG00013338
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28727573 ~ 28733671 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013338
ATGTATGTCTTGAGTGGCCCTGCGGAGGCCTGGACTCTCCAGCCCTCCTCTGTGAGAGCGCGGGTCAGGGCCACGGCCGCGGAGCTCCTGCATCAGAGGAGCCCGGTGCCAAGACTTGCCGTGGACTCGCGCCAAGAGGCACTAACGCTTCGATCCACACATCCACACGAACAGGCCCTGCTGAGGCCGCGGCTGGTGGAGGAGGACACGGAGGCATGGCAGAGGGCAGAGGGCTTCGCGGGGCTGCGCCGAGTCGGGGGGGTGGACCTGTCCTTCATCAAAGGGGATGATGTTAATGCCTGCGCCCAGCTGGTGGTGCTCAGCTACCCAGAGCTCGAGGTCTTGTATGAGGACAACGAGATGGTGCAGCTCACCGCCCCCTACGTCGCTGGCTTCCTGGCCTTCCGCGAGACTCCGTTCCTGGTGGAGGCCATCCGCCGTCTGGAGAGCAGGGACCCCAGCCTCCTGccacagGTGATCTTCGTGGACGGGAACGGGCTGCTGCACTACAGAGAGTTCGGGTTGGCGTGTCACCTGGGCGTGTTGACTGGACTGCCCTGCATCGGAGTGGCCAAGAACCTGCTACAGGTGGAGGGTGTGGAGAACAGCCCGGAGCACAAAGTGCAGATCCGAGAGCTGCAGGCTGGGGGCGACTCCTTACCTCTCGAGACCCGAGCCGGGAGAGTCCTGGGCAGGGCCCTGCGTAGCTCGGATAAGAGCACCAAGCCCGTCTATGTGTCCGTGGGCCACCGCATCAGTCTGGACACGGCCGTGCGTCTCACCCACGCCTGCTGCCGATACCGCGTCCCGGAGCCGATCCGACAGGTAAAGGCTGGATTGTGGGGGCCCTTCACGGTGGGAGGAGAAGCCGGGGTGACACGGAAATGGCACAGTCCGGCGCTGTCCCCGTGTCTGGAGAGCCAGATGGTCTCCATTTGCATACAGTGTCAGTGTAACATGCCCACAGTCTGTGCCAGATCTCTGTGCTTCCTGCCGTCTCTGTGCCACATGGCTGTGCTGTTCCATCGCAAATCCTCCTCGGCTCCCTGCAGCCCACACAGCACGCTGCGCCGGCGGATCAGCACCGGATCGTCGCTGCACCGAGCGCTGTGA

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006281 DNA repair biological_process
GO:0004519 endonuclease activity molecular_function

KEGG:

id description
K21813 ENDOV; endonuclease V

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013338 True 1113 mRNA 0.64 8 28727573 28733671

Neighbor

gene id symbol gene type direction distance location
AMCG00013337 NA coding upstream 11161 28704047 ~ 28716412 (+)
AMCG00013333 NA coding upstream 104062 28611303 ~ 28623511 (+)
AMCG00013334 NA coding upstream 117178 28610105 ~ 28610395 (+)
AMCG00013335 NA coding upstream 120690 28599903 ~ 28606883 (+)
AMCG00013330 LOC108424797 coding upstream 145319 28566098 ~ 28582254 (+)
AMCG00013340 NA coding downstream 62075 28795746 ~ 28799306 (+)
AMCG00013341 rptor coding downstream 108081 28841752 ~ 28914840 (+)
AMCG00013342 NA coding downstream 185082 28918753 ~ 28936041 (+)
AMCG00013343 LOC103354899,LOC102794595,LOC101480902 coding downstream 235857 28969528 ~ 28970154 (+)
AMCG00013345 NA coding downstream 270374 29004045 ~ 29011275 (+)
G43673 NA non-coding upstream 337613 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1309786 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1716922 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1797320 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1942012 26784953 ~ 26785561 (+)
G43712 NA non-coding downstream 4452 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 416307 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 423028 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 443380 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 445427 29179098 ~ 29202721 (+)
AMCG00013336 NA other upstream 41435 28676542 ~ 28686138 (+)
G43682 NA other upstream 238790 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 654774 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 791635 27928708 ~ 27935938 (+)
G43476 NA other upstream 1136755 27589139 ~ 27590818 (+)
G43802 NA other downstream 370618 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 906952 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1152091 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 1329709 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 1349973 30083644 ~ 30090117 (+)

Expression


Co-expression Network