AMCG00013341 (rptor)


Basic Information

Item Value
gene id AMCG00013341
gene name rptor
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28841752 ~ 28914840 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013341
ctcaggcCCGCTACAAGCAGAGCCTGGACCCCACAGTGGATGAGGTGAAGAAGCTGTGCACCTCGCTGCGCCGCAACGCCAAGGAGGAGAGGGTGCTGTTCCACTACAACGGGCACGGCGTGCCACGGCCCACGGTCAACGGGGAGATCTGGGTCTTCAACAAGAACTACACCCAGTACATCCCCCTGTCCATCTATGACCTGCAGACCTGGATGGGCAGCCCGTCCATCTTCGTGTACGACTGCTCCAACGCCGGCATCATCGTCAAGTCCTTCAAGCAGTTTGCCCTGCAGCGGGAGCAGGAGCTGGAGGTCGCTGCTATCAACCCAAACCACCCCCTGGCCCAGATGCCGCTCCCGCCCTCCATGAAGAACTGTATCCAGCTGGCAGCCTGTGAGGCCAGTGAGCTGCTGCCCATGAACCCTGACCTCCCCGCCGACCTCTTCACCTCCTGCCTGACCACGCCCATCAAGATCGCCTTGCGCTGGTTCTGTATGCAGAAGAGTGCCAAGCTGGTGCCCGGGGTGACGCTGGACCTCATCGAGAAGATCCCCGGGCGGCTCAACGACCGGCGCACCCCACTGGGGGAGCTCAACTGGATCTTCACCGCCATCACGGACACCATCGCCTGGAACGTGCTGCCCAGAGATCTCTTTCAGAAACTGTTCCGCCAGGACCTGCTGGTGGCGAGCTTATTTCGCAACTTCCTATTGGCCGAGAGGATCATGAGGTCATACAACTGCACCCCCGTCAGCAGCCCGCGCCTGCCACCCACCTACATGCACGCCATGTGGCAGGCCTGGGACCTTGCCGTGGACATCTGCCTGTCCCAGCTCCCCACCATCATCGAGGAGGGCACGGCCTTTAGGCACAGTCCCTTCTTCGCCGAGCAGCTGACTGCGTTCCAGGTGTGGCTGACCATGGGAGTGGAGAACAGGAACCCCCCCGAGCAGCTGCCCATCGTCCTGCAGGTCCTCCTGAGTCAGGTGCACCGGCTGAGAGCTCTGGACCTGCTGGGCCGCTTCCTGGACCTGGGTCCCTGGGCCGTCAGTCTGGCCCTGTCGGTGGGCATCTTCCCCTACGTCCTCAAGCTGCTGCAGAGCTCGGCCCGAGAGCTGCGACCCTTACTGGTCTTCATCTGGGCCAAGATCCTGGCCGTGGACAGTTCGTGTCAAGCTGATCTGGTGAAGGACAACGGCCACAAGTACTTCCTGTCGGTCCTCGCCGACCCCTACATGCCGGCCGAGCATCGGACCATGGCGGCCTTCATACTGGCCGTGATCGTGAACAGCTACAACACAGGACAGGAGGCCTGCCTGCAGGGGAACCTCATTGCGATCTGCCTGGAGCAGCTGAACGACCCGCACCCCCTCCTGCGCCAGTGGGTGGCCATCTGCCTCGGCCGCATCTGGCAGAACTTCGACTCAGCGCGCTGGTGTGGCGTGCGGGACAGCGCTCACGAGAAGCTCTACAACCTGCTGTCAGACCCTATCCCCGAGGTACGCTGTGCTGCAGTGTTCGCCCTGGGCACCTTCGTGGGCAACTCGGCGGAGCGGACAGACCACTCCACCACCATCGACCACAACGTGGCCATGATGCTGGCACAGCTCATCAATGACGGCAGCCCCGTGGTGCGCAAGGAGCTGGTGGTGGCACTGAGTCACCTGGTAGTCCAATACGAGAGCAACTTCTGCACCGTGGCGCTGCAGTtcatggaggaggagaagaactACGCCGTGCCCTCGCCAGCCAGCAACACAGAGCCCGGGAGCCTGACACCCGTGAGGGACAGCCCAGCCATCCCCCGGCTCCGCTCTGTCAGTTCCTATGGCAACATCCGGGCCGCTACCACGGTCCGCAACCTGAATAAGAGCCTCCAGAACCTCAACCTGAACGAGGAGGGGGGCCCCATCGCCTTCTCCCCAGGGAACCTGAGCACCAGCAGCAGCGCCAGCAGCACCCTGGGCAGCCCGGACAACGACGAGTACATCCTGTCCTTCGAGACCATCGACAAGATGAGGAGGGTCAGCTCCTACTCCTCCCTCAACTCCCTCATTGGGGTGTCCTTTAACAGTGTGTACACTCAGATCTGGAGAGTGCTGCTGCACCTGGCCGCCGACCCCTTCCCCGAGGTGTCCGACCTGGCCATGAAGGTCCTGAACAGCATCGCCTACAAGtctctatccctctctccctccccgcAGGCCACCATGAACGCCCGTCCCCAGAGGATCCTGGACTCCGGCTCCCTCACCCAGTCTGCCCCCGCCAGCCCCACCAGCAAAGGAGCGCACATCCACCAGGCCGGCGGCTCCCCCCCGATGCCCAGCACCAGCAGCTCCAGCCTGACCAACGAGGTGCCCAAACCACCGGTCCGAGACCTGCCCCCGGCCCGGCCGCCCTACACCCCCACGCTGGGTGGCCAGGCCCCGCACTCGCACCAGTTCCCGCGCACACGCAAGATGTTCGACAAGGGCCCCGATCAGatgGCTGATGACGGTGATGAGCCAGGCGGACACCGGAACTTCATCAGCGCTGCCATGCAGACCGGCTTGTGCGACTGGAGCGCCAAGTACTTCGCTCAGCCCGTCATGAAGATCCCGGAGGAGCACGACGTGGAGAGCCAGGTGCGCAAGGAGAGGGAGTGGAGGTTCCTGAGGAATGGCCGAGTGAGAAGGCAGAGCCAGCGCATCACACAGCGCGGAATCTCCCGCCTGGACGACCAGATCTTCATCAACCGCAACCCCGGCGTGCCCTCGGTGGTCAAGTTCCACCCCTTCAACCCCTGCATCGCCGTGGCCGACAGAGACAGCATCTGCTTCTGggactgggagaagggggagaaGCTGGACTATTTTTACAACGGCAATCCTCGCTATACCCGCATCACGGCCATGGAGTACCTGAACGGACACGACTGCTCCCTGCTGCTCACGGCCACAGACGATGGGGCGCTGCGCATCTGGAAGAACTTCGCCGACCTGGAGAGGAACCCAGAGATGGTCACCGCCTGGCAGGGCTTGTCAGACATGCTGCCCACGACCCGTGGTCTGGCCAGAAGGGTTTCAATCTATCTTGACAGGAGTAAGCAGGGAGGAGCTGGAATGGTAGTGGACTGGGAGCAGGAGACGGGGCTGCTGATGACCTCGGGGGATGTGCGCGTCATCCGGGTCTGGGACACAGACCGGGAGATGAAGGTCCAGGACATCCCAACGGGTGCGGACAGCTGTGTGACCAGCCTGTCCTGCGACTCCCAGCGCTCCCTGATCGTGGCGGGGCTGGGTGACGGCTCGGTGCGCGTCTATGACCGGAGGATGGCCCCCAACGAGTGCCGTGTGATGACGTACCGGGAGCACGGCGCCTGGGTGGTGAAGGCACACTTGCAGAAGGAGACTGACGGACACATCATCAGCGTCAGTGTGAACGGTGACGTGCGCTTCTTCGAGCCCCGGATGCCAGACTCGGTCAACGTGCTGCAGACGGTGAAAGGGTTGACGGCCCTCGACATCCACCCGCAAGCTAACCTGTTCGCCTGCGGCTCCATGAACCAGTTCATCGCCGTGTACAACGCCAGCGGAGATGTCATCAGCAACATCAAGTACTATGACGGGTTCATGGGCCAGAGGATCGGCGCCATCAGCTGCCTGGCTTTCCATCCCTACTGGCCCCACCTGGCAGTCGGCAGCAACGATTACTACATGTCCATCTACTCGGCGGAGAAGAGACTGAGATAACATCACTgcaccccccccactctctccacGCCTCTTGAACAACCCTGTAAATTACTCTTCTCCTGTACATATCCCATTACCAACTTGAATGTCTAGTGATGGCTGCTGCTACTCATGAATTCTtctaattgttattgttatggtGATGATGGGCTACTGATTGTAGACTTGGCTGTGCTGAGgagtgtgtatatttaattgcCTATACAGATTATAGAGATATTTTAAGCCCCCCGCTTTCCGTGTGAACTCTTCCTGCGAGCTGCGGCCGGGCCGACGGGCAACCACAATCGCACGCCTCCACCCAGGATATCGGCTCTCATGTCGCTCTTTATTTTTATCCAGAGCCTGTGAACTGCGAGACGTGTTCATGCCGCGGTCCTGAACAGGGCGAGCTCAGAGTAGCGACACAGCACTTTAGCGAGAACGTCTGTAGAAAGCAGAGATGCGGGGTTTCAGGAAGTGACCTCCGGTTGCACAGAGAGGCCCGGCAGCGCCAGCAGTGCGTACTTTCCCTCGATCCCGACCTTTGCCAAATCGACTAAATCCACAGTAGTGCTTTAAGGTAGTCATGTGGGCTCGTTTGTGTACATGCTGCCCAACGCAGTCCACTCTAAAATGTCCCGTTTGTCATGTGTGTAGAAGTTGTCTAAGCTGCCTGTTGCAGAGTAAAGCAATAATTTGTCCGGGGGGTCGACTGAGACTCCCCTTGTAGCGCAAACTCGACCGATCGCCAGCGTCCTGACGCCCGACACCCTCCTGAAAGATCAGACCGTGGGATCTGTCCCAATCGATCCCCCCAGGTCTCGCTGTGCTTTCAGGGCGGACGATAGATATTCGCATTCTTAGCCTCATCCGAACCGCGACGCTTAACTCTAGCTGTGGTTTAGTGCGTTTGAGCTTTTATTCCCCGCTGGGCACAGGGGGGTGAGTGTGGTCACAGTAGCAGCACCGAGGAGCTCGACGGTGGTGCCCCCAACGGTGGGGTGCTGCGCCCCCGACTCCAGCCACTAAAAAGGCCGCatggg

Function

symbol description
rptor Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in several processes, including TORC1 signaling; cellular response to amino acid stimulus; and positive regulation of protein serine/threonine kinase activity. Predicted to be part of TORC1 complex. Predicted to be active in cytoplasm. Is expressed in head; notochord; post-vent region; pronephros; and spinal cord. Orthologous to human RPTOR (regulatory associated protein of MTOR complex 1).

NR:

description
PREDICTED: regulatory-associated protein of mTOR isoform X2

GO: NA

KEGG:

id description
K07204 RAPTOR; regulatory associated protein of mTOR

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013341 True 4762 mRNA 0.61 32 28841752 28914840

Neighbor

gene id symbol gene type direction distance location
AMCG00013340 NA coding upstream 42446 28795746 ~ 28799306 (+)
AMCG00013338 NA coding upstream 108081 28727573 ~ 28733671 (+)
AMCG00013337 NA coding upstream 125340 28704047 ~ 28716412 (+)
AMCG00013333 NA coding upstream 218241 28611303 ~ 28623511 (+)
AMCG00013334 NA coding upstream 231357 28610105 ~ 28610395 (+)
AMCG00013342 NA coding downstream 3913 28918753 ~ 28936041 (+)
AMCG00013343 LOC103354899,LOC102794595,LOC101480902 coding downstream 54688 28969528 ~ 28970154 (+)
AMCG00013345 NA coding downstream 89205 29004045 ~ 29011275 (+)
AMCG00013346 NA coding downstream 107167 29022007 ~ 29029208 (+)
AMCG00013344 NA coding downstream 118302 29033142 ~ 29059640 (+)
G43712 NA non-coding upstream 102999 28738123 ~ 28738753 (+)
G43673 NA non-coding upstream 451792 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1423965 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1831101 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1911499 26872821 ~ 26930253 (+)
G43810 NA non-coding downstream 235138 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 241859 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 262211 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 264258 29179098 ~ 29202721 (+)
G43895 NA non-coding downstream 519210 29434050 ~ 29446698 (+)
AMCG00013336 NA other upstream 155614 28676542 ~ 28686138 (+)
G43682 NA other upstream 352969 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 768953 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 905814 27928708 ~ 27935938 (+)
G43476 NA other upstream 1250934 27589139 ~ 27590818 (+)
G43802 NA other downstream 189449 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 725783 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 970922 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 1148540 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 1168804 30083644 ~ 30090117 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_00379383_00617969 RPTOR coding CI01000112 null 379383 ~ 617969 (+)