AMCG00013342


Basic Information

Item Value
gene id AMCG00013342
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28918753 ~ 28936041 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013342
CTGCCGTCTGTGAGACAGGCTCAGACTGTGCACAGCGATGGATTTGCAGAGCCAGGCGCCGCTCCTCGGGCGAACGCAACGCACCCCTCTGGGGATGAAGACATACTTTCTCCTTGCAGTGATCCTTGCCACCTTACAAGGTCTTCCAATCAACTCTGTGTTTACTATCAACAATGTGAATCTCACAGTTCTGCCCAGTTCCGTCGTGAACAGTGGGACCAACGTCACCTTGCAATGCTTCGTGGACCTCAGTGTTACCAACAACCGGCCGAACTCCTTCGAGTACAACTTCTTGAACAACGACGTGGTGGTGTACTCCAAATCCCACAGTGAGAATGTGCTGCTGTACCAGATCGCCTCGGCCAGGGCGTCCACGTCTGGAAACTACAAATGCAGAGTCAAGGTAGAAGGCACTGATGACCAGAGTAATTCTGAAAAGCTCAAGGTTTTAGGCCTGCAGACGCCCATCCTCTCTGTGAGCAAACACTCCATCTTGGAGGGTGACAACGTAACTTTGAACTGCAGTGCCCCTCTGGAGACCGGCAGCTTCATCTTCACCTTCTACAAGAACTCGGTGGAGTACACACAAGTGCGTACTACCAACAACGTGGCGAAAGTGCAGATGAAGTTAAAAGAGAGCGCCAGCTTCTATTGCAATTTCCAGGTCATGACCGTGCCGGACGCCGGGACGTCCAACAACAGTAACACGCTGAGCATCACCACGACAGAATCGCTCAAAGAACCCATCATGGAAATCCATCCATCGCATAACATCATCGAAGGAGACGCGCTGACCATCGTCTGCCGATCCTCCACTGACCCCCGCTTCCAGGCAGGGGCGGTCAAGATCTTTCTGAGGAAAGGTGACAAGATCCTCAAAGCGGGCAACGGATCAGTCAGCCACAGCATGATTGCCCAGGCAGACGACTCGGGGGAGTACGAGTGCAAGGCTGAGAATGAGCGCAGGGTGCGGAAGTCGGCGAAGAAAATCCTCAGAGTGACAGAGCTGTTTTCTAAGCCGGTGTTGGTGCAGAGCCCAGCGGAGATCGATGAGGGGAAGCCGTTCAATCTAACCTGCCATGTGGAGAATAAGATATTCCCAGACATGCAGCTGAAGTACACCATCTACAAGAATATCACCGCGCTGACCTCGGGCAGCCCAGACGGCAGTTACACCAATGACAGACCAACGCTGGACGACGAGGGCTTCTACCACTGCAGTGCCGTGGCCGAGTTCAAACCCATCAACAAGACCAGCAAGGAGATCTTCTTAAAAGTGCACACTCTGGTTTCCACGCCCACTATTGCTGTCAGTGGGAACGTCATCTTGAACAAACCTTTCAGTGTCGTATGTCGCTCAGACCGGGGGAGCGTCCCCATCAGTTACACCCTGATGAGGGGCAGCGAGGCCTTCAAAACGCTCGCAGTATGGACCGCCCTGGAGCCAGCCCACTTCACCGTAACCATCAAGACAAAGGAGGAGATCCGCGACTTCACGTGCGAAGCCCAGAACCGGGGGCCAAGTTCGGTCCGGACCAGCGCGGCGCTCAACGCGTCGGTGATCGAGCCCGTGTCCTCGGCGGAGCTGCAGCTCATCACCGGGCCGGACGTGGCCGAAGGACAGAGCCTGACGCTGCAGTGCCAGGCGGTGGGGGGGACGCTCCCCATCGAGTTCCACTTCTACAAAGGGGGCCAAGAGTTCCAGCCGGACCCGGACAAGAGTGGTCGTCACTGGTCCCACATCATCAAGGCCGTGACCCGAGAGGACAGCGGCACCTACTACTGCGATGCCACCAACCGCGCCGGGGAAACCAGGAGCAGCGCGAAACTGACCGTCAATGCTGAGATCAATGGGCCGGGTGACGTGAGCGCAATGCGAATGGACCGGGTCCAGGGGCTGCGCTGGGCCCACGGGCAGATCGGCTCTCTGGGGTCGCGACCCGTGCACGACACTCACGGAACAGAACTGACGCTGGCCTTGTGGAAATTGGCTCTGATCGGCCTGTTCtgcgtgctgctgctgctggccaTCGCGGCGTTCTGCGTCATCTGGCACAAATCCAGAGCAGCTAAAAAAGACACGGCGGCAGAACTGTCAGTAAAGCCTTCGAGCCCTAAATCAGATGACTCTTTAACAGTGAGTCTCACCAACGAGACAGAGGTTTATAACAAAGTGGCTGTTGGCCCCGGGGGGGGCGCGCGTGTCTCGCAGTGTGAGAGCCAGTCTCCGCCAGGCTCTGAGGACATCAGCGGCGATGACACGCCCAGCGAGCCGGACGTCGAGTACACAGAGGTGGTACACCTGGAGCCGAACCCCAGCCGAGCTCCAGTGAGAAAAGGCACCGACACGGTCTACAGCGAACTGAGGAACTCCAGCCAAGGTGCTGCGTACCACGGCGATTGTGACTCGGTGGAGTACGCACAGCTCCAGCACAATACTGTGCAGCCCACACACTGACCCTCGGCGAGAGGCCTGGATCCCCGTGCCGCACAACCCCTCCGCCCGCCGTGTCCCCAGGCAGCCCCCGCCGAGAGGGCCATCCCACCCCGACCTCCGCCTCCatctatttattgtattttatactgTACAGCTTTCGAAGGTCACGTGCTGCATCAACAGCTTCAAGGAAAttaaagttttctttctttttatttgtttcctgctTCCTGTGGTTCCTGTGGTTCCGGTTTCCCTGAACTTTTGTTGATCCAGGTTTCAGACTCTGGTGGCAGCCCCCTGTGTGCTGCCACAGACGCACAAGTTGATTTTGTCGGCACCAATGGGGGAGGTCCTCTCAGACCCCACCTGATTAAAACGCATTGCCCCTGTGTTCCTCCTCGAGGTCGGTGTGTCCC

Function

GO: NA

KEGG:

id description
K06471 PECAM1, CD31; platelet/endothelial cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013342 True 2856 mRNA 0.57 17 28918753 28936041

Neighbor

gene id symbol gene type direction distance location
AMCG00013341 rptor coding upstream 3913 28841752 ~ 28914840 (+)
AMCG00013340 NA coding upstream 119447 28795746 ~ 28799306 (+)
AMCG00013338 NA coding upstream 185082 28727573 ~ 28733671 (+)
AMCG00013337 NA coding upstream 202341 28704047 ~ 28716412 (+)
AMCG00013333 NA coding upstream 295242 28611303 ~ 28623511 (+)
AMCG00013343 LOC103354899,LOC102794595,LOC101480902 coding downstream 33487 28969528 ~ 28970154 (+)
AMCG00013345 NA coding downstream 68004 29004045 ~ 29011275 (+)
AMCG00013346 NA coding downstream 85966 29022007 ~ 29029208 (+)
AMCG00013344 NA coding downstream 97101 29033142 ~ 29059640 (+)
AMCG00013350 NA coding downstream 131789 29067830 ~ 29068402 (+)
G43712 NA non-coding upstream 180000 28738123 ~ 28738753 (+)
G43673 NA non-coding upstream 528793 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1500966 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1908102 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1988500 26872821 ~ 26930253 (+)
G43810 NA non-coding downstream 213937 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 220658 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 241010 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 243057 29179098 ~ 29202721 (+)
G43895 NA non-coding downstream 498009 29434050 ~ 29446698 (+)
AMCG00013336 NA other upstream 232615 28676542 ~ 28686138 (+)
G43682 NA other upstream 429970 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 845954 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 982815 27928708 ~ 27935938 (+)
G43476 NA other upstream 1327935 27589139 ~ 27590818 (+)
G43802 NA other downstream 168248 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 704582 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 949721 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 1127339 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 1147603 30083644 ~ 30090117 (+)

Expression


Co-expression Network