AMCG00013346


Basic Information

Item Value
gene id AMCG00013346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29022007 ~ 29029208 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013346
CGCGGTGAGAGTTTAGCTCTTAAGTGCTGCCATGTACTGCTTCGCTGGcggtttgtgtttaaatgatttaaagctTCTGCAAATCAGGCTTCCTGCAACCAGGGGGTGCAGTGTgtgcaaatattataatttcttgctctgtggttaaaaaaacatcCTGAAGGAATTCAGGGTGTGTTTTAGAGACATGAAAGTAAACCGAGTCTCGCGATACAGAGGAATTATCTTCCACTGTGACccagtgctgtgaaaatgtgCTCTTCGATGTCGGGTGTGTTTTGTCTTGCAGATGTGGGTTGTAGAGCTACAGGAGGTCCTCGTTTCCATAGTTAGAGCACTGCACATCCCCCTCGACGCACACCCCAACCCAGTTTCGGGAGATGGCCTCGCCTGCCTCTCTTGCCTACCTGAAGCCAGGCACAGTGCGCAGCAGCCAGTGGGGTTGCCACAGCATCCGAATGCCTCCAGCCTCACATTTCACAGACTGAGGAATGACAAAGGGGGACTTATCGCCACGAGATGGAGGGGGATGGGGGATAACAGACACATCACCTGGGCTAATGGGGATTACACAATGAATAATTTAGTGGCCAACATTAATTCGAAAGGTGATTCCCATAATTGGAGCATCGCTGACAACGCAGCTTCCCGGGTCCTTCATGTAAACGAGGGCGTCGGAAATGCCAACGATAATGACTTGCGCGTGCGCTCATCTGGAGAACTCCTGCACATCAATTCTGCAAACCGAGTCGAGCTGGAGATAGAAGAGCTTTTCCACTTCATCGGCACCATGTCTCCTGCCATCGCGTCGTCCCCGGGCGCGTTCGAGTGCCTCTCCTGCGAAACACGGCCCGCTCTGGCTCCTGTCAGCTGCTATGAAGGGCACAGCGTCCACTGA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013346 True 898 mRNA 0.52 4 29022007 29029208

Neighbor

gene id symbol gene type direction distance location
AMCG00013345 NA coding upstream 10732 29004045 ~ 29011275 (+)
AMCG00013343 LOC103354899,LOC102794595,LOC101480902 coding upstream 51853 28969528 ~ 28970154 (+)
AMCG00013342 NA coding upstream 85966 28918753 ~ 28936041 (+)
AMCG00013341 rptor coding upstream 107167 28841752 ~ 28914840 (+)
AMCG00013340 NA coding upstream 222701 28795746 ~ 28799306 (+)
AMCG00013344 NA coding downstream 3934 29033142 ~ 29059640 (+)
AMCG00013350 NA coding downstream 38622 29067830 ~ 29068402 (+)
AMCG00013351 ube2o coding downstream 50792 29080000 ~ 29091607 (+)
AMCG00013352 znf207 coding downstream 86245 29115453 ~ 29121435 (+)
AMCG00013356 ern1,LOC106601756,LOC106606681 coding downstream 121034 29150242 ~ 29156585 (+)
G43712 NA non-coding upstream 283254 28738123 ~ 28738753 (+)
G43673 NA non-coding upstream 632047 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1604220 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 2011356 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 2091754 26872821 ~ 26930253 (+)
G43810 NA non-coding downstream 120770 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 127491 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 147843 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 149890 29179098 ~ 29202721 (+)
G43895 NA non-coding downstream 404842 29434050 ~ 29446698 (+)
AMCG00013336 NA other upstream 335869 28676542 ~ 28686138 (+)
G43682 NA other upstream 533224 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 949208 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 1086069 27928708 ~ 27935938 (+)
G43476 NA other upstream 1431189 27589139 ~ 27590818 (+)
G43802 NA other downstream 75081 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 611415 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 856554 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 1034172 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 1054436 30083644 ~ 30090117 (+)

Expression


Co-expression Network