AMCG00013349 (LOC105417629)


Basic Information

Item Value
gene id AMCG00013349
gene name LOC105417629
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28991437 ~ 28996380 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013349
ATGGAACGTGTAGCTCCAATGCAAAACAGTGCGCAGGCGTGCAGACGTGCGCTTGTGTTGGACCGCTACGTGCGGCAGTCACACAGTGTACCGTCAGAGATGCAGGTTGAGTTCCTCATCTTGTTGCAAGCTgtgatatctctctctctctttccaggtTTTTCCCTGGCCGGCCTCTCCACGACCCCCCGGAAGCGCCAGGTGCGTTTCTCTGCCCGTCACGACATCATGCTCCTGCGTGAGGTCATTGCCCAGAACCCCTTCTCCTCCAAGGAGCCCGGCCGCATCTGGTCTAGGGTGGGCGAGCTCGTCAGTACCGCCCTGCAGGATGAGAGCTTCGAGGTGGACGCCAGGCGCTGCAGGGAGAGGACCGCACTGCTCCTGGACTACTATAAGAAACAGGACTTTGCCAGCCTGCGGAGgttcGGGACGGAGCGTCTGTACGCACAGAAGGAGGACCTGCTACATGAGGTACTGGAGCTGGAGGCTGAGAAGGGTCTGCTAGGAGCTACAGAGAGCAAGTACCAGGACGAGGCAGCTGTGGAGCTGAGGAAGAGGGCGCTGGGAGAGCTGGAGCATCCTGAGTCTGAGGAGAAACCGGTGCCACTGACTCAGCCAGGGCCAGCAGAGGCAGtTGGGCTGCCCACCCCAGAGACAGAGGAGCAAGAAGAGCTGCCAGAGCTGGCTGCGCCAATGGCCAAGAGGCCCTGCCAGTGCTGCTGCCAGACGTACTCGGAGATCCTGAGTTTCCTGGAGAAGCGGGCGGAGGCGGAGCAGCACCTGCGCGAGGAGGAGGTGGCCCTGCGGCGCGAGGAGCTGGAGATCCAGAGGAGCAAGATCGccctggagagggagaggctgAGCGCTGAGCGTAGGGAGAGGGAGCGCCGCTTCGAGCTGGAGAGCCAGGAGAGGCAGGTCATCTTGGACCTGCTCAAGGAGAAGGTGCTCCGGGGCTGA

Function

NR:

description
PREDICTED: zinc finger and SCAN domain-containing protein 29-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013349 True 960 mRNA 0.62 5 28991437 28996380

Neighbor

gene id symbol gene type direction distance location
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding downstream 2432 28974690 ~ 28989005 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding downstream 213963 28771933 ~ 28777474 (-)
AMCG00013332 NA coding downstream 470000 28502022 ~ 28521437 (-)
AMCG00013331 NA coding downstream 495438 28492946 ~ 28495999 (-)
AMCG00013326 nup85,LOC106601803 coding downstream 773379 28210403 ~ 28218058 (-)
AMCG00013347 aanat coding upstream 65508 29061888 ~ 29063240 (-)
AMCG00013353 NA coding upstream 102607 29098987 ~ 29114047 (-)
AMCG00013355 NA coding upstream 131091 29127471 ~ 29155513 (-)
AMCG00013354 ern1 coding upstream 164850 29161230 ~ 29173911 (-)
AMCG00013357 NA coding upstream 181948 29178328 ~ 29202068 (-)
G43714 NA non-coding downstream 224085 28676824 ~ 28767352 (-)
G43725 NA non-coding downstream 252664 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 273497 28716291 ~ 28717940 (-)
G43691 NA non-coding downstream 500341 28488842 ~ 28491096 (-)
G43690 NA non-coding downstream 509382 28481732 ~ 28482055 (-)
G43834 znf207,LOC107753267 non-coding upstream 118842 29115222 ~ 29117961 (-)
G43831 NA non-coding upstream 122993 29119373 ~ 29121319 (-)
G43919 NA non-coding upstream 501330 29497710 ~ 29499573 (-)
G44086 NA non-coding upstream 1092423 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 1310646 30307026 ~ 30310766 (-)
G43684 NA other downstream 523531 28467312 ~ 28467906 (-)
G43594 NA other downstream 918650 28068213 ~ 28072787 (-)
G43473 NA other downstream 1422286 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1698364 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 2434113 26553549 ~ 26557324 (-)
G43869 NA other upstream 257016 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 930003 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1043825 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 1084234 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 1169437 30165817 ~ 30184424 (-)

Expression


Co-expression Network