AMCG00013351 (ube2o)


Basic Information

Item Value
gene id AMCG00013351
gene name ube2o
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29080000 ~ 29091607 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013351
ATGTCTAAACAGCAGCTGAAACTTGAAGATCGATCGATTGTGCCTCGAGACGTTGTCCGTCGCCTGAGTCCCAATGACAGCCAGTGCGGGACTGTGATTGACGTCAACATTGAATGTGCAGTGAAACTTGTTGGAACAAATTGTGTCCTGTACCCAGTGAACAGCAGAGACCTCCAACACATATGGTCTTTCATGTACGGTGACTACATCGCTTATGACTTCTGGCTGGGGAAAATCTATGACCTGACAAACCACGTTATCTTGAAGCTGTCCAACGGAGCCAGGTGTTCCATGAGCGTCGAGGACGGAGCAAAGCTGTACGATGTGTGTCCCCACGTCAGCGACTCGGGCCTGTTCTTCGACGAGGCATATGGTTTCTACCCGGGCCAAGTTCTGATCGGCCCTTCGAAGGTGTTCTCCAACGTGCAGTGGCTGTCGGGGGTCAAACCCGTCCTCAGCAAGAAGAGCAAGTTCAGGGTGGTGGTGGAAGAGGTCCAGGTGGTGGAGCTGAAAGTGACCTGGATCACCAAGAGCTTCTGCCCCCGAGGCACGGACAGCGTGTACCCGCCCCCGTCCACCATCGCGCAGGAGAACCTGTGCAGAGTGAAGCGACTGGGCTACTACGAACACACGCAGCGGCAGCTGGGCGACCGGGCTCTGTACGTGTTCCCCGCCAAGGGTGACGCCACACGGATAACCTGCGAGGGTCCGGAGGGGGCCCCTGCCCTGCCTGAGGGCTCTGTCGCCAAGAAGGTTAAAAAGCTACTGAAGAGGGACGTGGGGAAGAAGTCCACAGACACGACGGAGACGCCGGCCTCCAAAGAACCCCCTTCGGAGAAGACGGAGAGCCCAGAAGGAGAGAAGAGGCCGGAGAAAGAGGTGGTGGGTGAGGGAGCCCCAGCGGTGACCCAGACAGAGGAAGTCTGTCCTAATAACGGGCCAGTGGCGGCGGTGGGGCGCCCCAAGGAGCGACGGGAGGGCGGTGCAGTGGTGGCGCCAGAGCTGTGGGTGGAGGGCGGCGAGCAGGACGCAGATGACGAGGCGGCAGACGACACGGACGACACCAGCTCGGTCACCTCCTCCGCCAGCTCCACCGCCTCGTCACAAAGCGGGGGTGCCGGGCCGCACCGCAAGAAAAGCATCCCGCTATCTATCCGCAACCTGAAGCGCAAGCACAAGAAGAAGAGGACCAAGTTCTCCCGCGAGTTCAAGCCAGGAGACAGAGTTGCTGTGGAGATCGTGTCCACGAAGACGTCCGCGGATGTGATGTGGAAGGATGGGACCATCGAGACCAACATCCGCTCCAACGAGCTCTTGCCCATCCAGCACCTGGACAACTACGAGTTCTGCCCCGGGGACTTCGTGGTGGACAAGCGACCCCAGGCCTCCCAAGACCCCGGGGTGTACGGGGTGATCCAGTCCGGGGACCACAAGGGCCGGACGTGCGTGGTGAAGTGGGTCAAACTGAACGCCGGAGGGGATGACGTGGAGGTGATCGGTGAGGAGGAGGACGTGAGCGTGTATGACATCGCCGACCACCCCGACTTCCACTTCCGCACCACCGACATTGTCATCCGGATCTGGAACTCGGAGAATGCCCAGGCAGTGGACTGTGAGAACGAGccgTCCGTGGGGCAGGTGTCTCGGGTGGATGTCACCAGCAAGGTGGAGGTGGTGTGGGCCGACAACACCAAGACCATCGTTCTGCCACAGcACCTGTACAACGTGGAGTCCGAGATCGAGGAGACTGATTACGACTCGGtggagggcagcagcagcggcgcGTCCTCGGAGGAGTGGGAGGATGAGAGCGACAGCTGGGAGACGGACAACGGACAGGTGGAGGACGAGCATGGGGGCGAGTCCGCGCCCGCTCCCACACCCACGGGGCCCCCGGGACACCCCGAGGAGGGAAAGGCCACGGCACAGCGCCTCACCACAGTGGAGGAGCTGGAGGGGGCTATTGCGACCGCCACGCTGGCCGGGGCCGGAGCCGGCGGCATTGACGAGAAGGCTGGCAAGGAGGGGCCGCCCCGGGGCTTCAGGGAGCTGAAGGAGGCGCTGAAGATCCTGGAGAGCCTGAAGAACATGACCGTGGAGCAGCTGTGGACCGGCTCGCCCACCTCGCCCACCGTGGAGCCCGAGAAGCCCACCAAGGAGAAGAAGTTCCTGGATGACTTCAAGAAGCTGCAGGAGAACCTGAAGAAGACTCTGGACAATGTGGCCATTGTGGAGGAGGAGCGCATGGAGGCTGTGGCCGaggtggagaaggaggagaagagcCAGGAGCCCCAGACGCCCGTGCGCTCTGAATGGCCCAGCGACACGCCTGTCCTGTGCCAGCAGAGCGGGGGCAAGCCGGGCGTCACCTTCACCAGCGCCAAGGGGGAGGTGTTCTCAGTGCTGGAGTGGGCACCGGACAGCCACGCGTTTAAGAAGATGGAGTTCCAGCCCGCAGAGGCCAAGAAGTTTTTCAGCACCGTGAGGAAGGAGATGGCCCTGCTGGCGACGTCCCTCCCCGACGGCATCATGGTCAAGACCTTCGAGGACCGCATGGCAAGTGCTGCCTCTTACCTCCTGTCCCCGAACTCCCCTGGTGATCTCTTCTCGGCGCTGATTAAAGGCCCCACGCGCACCCCCTATGAGGACGGCCTTTTCCTCTTCGACATCCAGCTGCCCAACATCTACCCCGCCGTGCCCCCACTGTTCCGCTACCTGTCGCAGTGTAGCGGGCGGCTCAACCCCAACCTGTATGACAACGGCAAGGTGTGCGTCAGCCTGCTGGGCACCTGGATTGGCAAGGGTACTGAGCGATGGACCAGCAAGTCCAGCCTCCTGCAGGTTCTGATCTCCATACAAGGGCTGATCCTGGTGAACGAGCCCTACTACAATGAGGCAGGCTTCGACAGCGACCGCGGGCTGCAGGAGGGCTACGAGAACAGCCGCTGCTACAACGAGATGGCACTCATCAAGATGGTGCAGTCGATGACgcagctgctgctgcagccGGTGGACGTCTTCCAGCAGGAGATCCGCGAGCACTTCCTGTCCAGCGGCTGGCGGCTGGCACAGCGCATCGAGAGCTGGCTGGAGCTGAGCGACGGCGGGGGGGGCAGACGGCACGAGAGTAGGACCCCCGAGCGCCCGCTGTCTACCGAGCCCGGGGAGGAGCTGGGGCCCACCTCGGCACAGGGCAGTCCTcgggaggaggagctggaggactCGGGCCTGGGCATCTCCGGCCTCTCCCAGCTGGAGCACAGCCAGCACTCGGACTCTGAGGCCGCCGGGCCGGGGAAGGGGGTCCCCCCAGGGGCAGAGGGGGCAGCGGGCGGCACAGCAGGGGAGCCCAGGGCCGCCCAGGACTCGGTGGGGGGCCAGCCAGTGGTCAGACcaaagaagaggaggaagagctACCGCAGCTTCCTGCCCGAGAAGAGCGGCTACCCGGACATCGGCTTCCCCCTTTTCCCCCTGTCCAAGGGCTTCACCAAGAGCGTGCGTGGCGTCCTGCAGCACTACCGCGCAGCTCTGAGCCACGCCGGGGTCCCTGAGAGAAGGGAGGACAAGTAA

Function

symbol description
ube2o Orthologous to human UBE2O (ubiquitin conjugating enzyme E2 O).

NR:

description
PREDICTED: (E3-independent) E2 ubiquitin-conjugating enzyme isoform X3

GO: NA

KEGG:

id description
K10581 UBE2O; ubiquitin-conjugating enzyme E2 O

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013351 True 3573 mRNA 0.63 19 29080000 29091607

Neighbor

gene id symbol gene type direction distance location
AMCG00013350 NA coding upstream 11598 29067830 ~ 29068402 (+)
AMCG00013344 NA coding upstream 20360 29033142 ~ 29059640 (+)
AMCG00013346 NA coding upstream 50792 29022007 ~ 29029208 (+)
AMCG00013345 NA coding upstream 68725 29004045 ~ 29011275 (+)
AMCG00013343 LOC103354899,LOC102794595,LOC101480902 coding upstream 109846 28969528 ~ 28970154 (+)
AMCG00013352 znf207 coding downstream 23846 29115453 ~ 29121435 (+)
AMCG00013356 ern1,LOC106601756,LOC106606681 coding downstream 58635 29150242 ~ 29156585 (+)
AMCG00013363 prkca,LOC107664393 coding downstream 476882 29568489 ~ 29573439 (+)
AMCG00013365 LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241 coding downstream 494644 29586251 ~ 29627558 (+)
AMCG00013367 cacng4,LOC107548710 coding downstream 606225 29697832 ~ 29710210 (+)
G43712 NA non-coding upstream 341247 28738123 ~ 28738753 (+)
G43673 NA non-coding upstream 690040 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1662213 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 2069349 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 2149747 26872821 ~ 26930253 (+)
G43810 NA non-coding downstream 58371 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 65092 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 85444 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 87491 29179098 ~ 29202721 (+)
G43895 NA non-coding downstream 342443 29434050 ~ 29446698 (+)
AMCG00013336 NA other upstream 393862 28676542 ~ 28686138 (+)
G43682 NA other upstream 591217 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1007201 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 1144062 27928708 ~ 27935938 (+)
G43476 NA other upstream 1489182 27589139 ~ 27590818 (+)
G43802 NA other downstream 12682 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 549016 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 794155 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 971773 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 992037 30083644 ~ 30090117 (+)

Expression


Co-expression Network