AMCG00013353


Basic Information

Item Value
gene id AMCG00013353
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29098987 ~ 29114047 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013353
ATTATTTCTAAGTTATTAAACTGGGTTATGATGTCCCCTTTGGCAGGGGTCTGTCAGCAACGTCATTACACGTGTCGGCTCGATTGTAATCTGCACAGAAACTCCCTTGACCCGTTTTCTGAGCAGCTCTCTCAGCGCTGCAACAACAGCATGCTTCTtctgatgatgaagatgaagatgatgattaaTGACCCTCTATTGTGTGCATTGCACTTGAccaagaaagacacacacacacattgagcATGCACGCAAGACGACGCTGCAGGAGAGCGAGATAATTGAATAGGACGTGAAACAGTTTCTGCCAAAAGTGCACTGATGTGCGCACGGGTGGAAGAGGGCTGTCAGTCTCGGTATGGAAGTGCTGCCATTGCCTGTACAGGCGCCAGGGGGCGGCTTCAGCCCCTCTCCCACACGCCGCACCGATGGGGTCCGATGACTCCGGCAGCGCTGAACTCACATCTCCACTGCAGCTGGAAGTGCCAGGCAGGCAGTCGCCGTCTCCtcggctctctctctctctctctctctctgtctcagatCTTCCTCATCCCTCCCTCACCTCTCCGGCTGCAATGGACCCGGAGAAGCCCGAGCTGCCCGACGGGGACGGGCTGTCGCCGGTGCTGCTGTACGGGGAGTTCACCGGCGCCCAGAACAGACGGACCCGGTTCGCGGTGCGGCTGACCGAGCGCCGGCTGAGCGCGCAGAGGATCGCCGCGGCACCTGCGGCGCGGAGTCAGGTGCTGCACAACCTGGAGGACTGCGTCGGCTGCCGGGCTTTCGCGGAGCAGGACGCCTCGGACTCGGGGGCTTATTTCTCTGCCTATTTCTACCCATTGAGGAGGCGGTGGATGAGCTCCGGGGCGGCCCGGCAGCGGGTCGAGCGCTGCTTTCGGGTGGCTTCGTCCCAGGACGCGCAGCTCAACCTGGCGGAGGCAGAGAGGTGGGCTCGGGCCATCCGCCAGGGCTGCAGCCGCCCGCGGCCGCACAGAGCAGGGACACTGTACGACATGCTGCCGACACCCGGTCgtctcctgctgctgctcaaCCCCCACAGCGGGAAGGGACAGGGCCTCTCGCTCTTCAACAGCCACATCCAGGGGATGCTCACCGAGGCCGGCGTGCCGCACACACTCGTCGTGACAGagcGTCAGAACCATGCCAGGGAGCTGGTGAGAGAGGCGGACCTGTCGCAGTGGGACGCCGTGGTCATCATGTCCGGGGACGGCCTCCTTTTTGAGGTGGTCAATGGCCTGATGGAGAGGGAGGACTGGGAGACTGCCATCCAGACCCCACTGGGAATCCTGCCCGGGGGCTCGGGGAACGCCCTGGCGGCCTCCATCAACCACTACTCTGGGTCCCATGCCGTGACGGGTGAGGAGCTGCTGGTGAACTGCGGCTTCCTGCTGTGCAAGGGGCTGGTGTCCCGGCTGGACCTGGCATCGGTGCACATGGCCTCCAGCCAACGTCTCTTCTCCTTCCTGTCCCTGGCCTGGGGCTTCGTGGCCGACGTGGACACAGAGAGCGAGAAGTACCGGCACGTGGGGGCGGCGCGCTTCACGCTGGGCACTCTGGTGCGGCTGACCTCCCTGCGGCTGTACCGGGGCCGGCTGGCCTACCTCCCCGCCGAGGAGCCCCAGCTGCAGCCGCAGAGCCCGGCCGAGGGCTCCCCCCCAGCCCACGGCAGCTCCTTCTGCTCCTCTCTGCTGTGCCGCCCCGGGAAGGCCTCCTCCGACCAGAACGCAGCCCACACCCTCTACAACTCCTCCAACTCCAACAATGCCACCAAAGCCAAGAGCAGCGAGTCTCCACCGGCGGCGCTGCGTGGGCCGGACGACTCCCTACTGGTGCCTCTGGACCAGCCGGTGCCGGGCCACTGGACGGTGGTGAAGGAGGAGGAGTTCGTGCTGATGCTGGCCATGTACCAGTCCCACCTGGCGGAGGACCTCTTCGCCGCCCCCGAGTCCACACTGTCGGACGGGCTGATCCACCTGTTCTACGTCAAGGCGGGGATCTCCCGGGCTGCCCTGCTGCGCCTCTTCCTGGCCATGGAGAAGGGGGTGCACTTGACCTCCAACTGCCCGCAGCTGGTCTATGTGCGGGTCAGAGCTTTCCGCCTGGAGCCCTTCACCCCCAAGGGTGTGATCACGGTGGACGGTGAGGTGGTGGAGTACGGCCCGGTCCAGGCACAGGTGCACAACGGGCTGGGCCGACTCGTCACCGGCTGACCGCGCTCGTGCACAGAGATGGTACGAGGAGTAAAGCGGTACTGTGATGGATCCAAAGGTGatagtttcatttttgtattgtatattttctgaACTGAAGCCCTGACAGTGCCAAAGTAGTGACCCTTTGggatatttattattcattaatattattttataatcgGAGTCCTACGTTCGTCCTGCTTTGACAATGTCTCTTGCTGCTCGTTAGTGGAGCTGGGACGGAGGGGTCCCTGCCAGGATTGTCGGTGGTGCATCGCTCTGACGGGTGATGATTTAACCCTTTCTTTTTCCCGTCTTACCCAATAGCTGCTACACATTCATAGATAACTGTATCCCCCTGCTTAGAGAAAAGCATGAATCAGTGATCTTACGAGTAGCACGAAGATCTGAGCTGCAGGTTGCGTCAGCTTCACAGCTGATAATTACTTTCTTTaggttatattatttttgcagCGGCTGAGCGTTGACTATATTCCCGGAGAGTAATCAGTCTTGATTTAAAGGGTCCGTGTGCTAATCGTTTCTGAGTGAGGAAAGGGAGCTGGAGGTCAGATGTGACATTTTGAATAAGCTTCAGCCGCACACGAGTGCCCTGTCACTGAGCTGCAGAACCATCGAAACGACTGAACTcctacatctatatatatatatatacatatatatatgaatcatcTCATTAAAAAACCCATGCATATATGCATGACGTCATGCTGTGATGCTTTTCATAGACGAGCTGTGTCTGTAGGGGAGGTCGAGAAGGACGCACCAGTCAAAATAGCGTCTGGCTGTTTAGAAATATTGCATGCCGAGATGATGTGTATGTAGCGAATCCTGCTGAAGGGAAGGGGTTAAATCTGAGCCTTGACTCGAGCCGTCACCACCCGTATTGTCTCCCCCGTGCACTGTGTGTCCTACACGGGGGAGTCAAGAGGATATCCTCAAACGTTGGCACACCGGTCCTGTTCTGTCCAATAGGAACCGTGTGGATTTTTGAGCCATAAGCACCTATGTGTCCTTATCTGAATCcttgaaacacaaaaataaaacgtttgcAGCGACGTTTGTGTTCCTGTAGAAGAGAACCTGGAGGGGAACTGGGGTTGGTCAAGAAAATGctg

Function

GO: NA

KEGG:

id description
K04718 SPHK; sphingosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013353 True 3358 mRNA 0.58 5 29098987 29114047

Neighbor

gene id symbol gene type direction distance location
AMCG00013347 aanat coding downstream 35747 29061888 ~ 29063240 (-)
AMCG00013349 LOC105417629 coding downstream 102607 28991437 ~ 28996380 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding downstream 109982 28974690 ~ 28989005 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding downstream 321513 28771933 ~ 28777474 (-)
AMCG00013332 NA coding downstream 577550 28502022 ~ 28521437 (-)
AMCG00013355 NA coding upstream 13424 29127471 ~ 29155513 (-)
AMCG00013354 ern1 coding upstream 47183 29161230 ~ 29173911 (-)
AMCG00013357 NA coding upstream 64281 29178328 ~ 29202068 (-)
AMCG00013358 NA coding upstream 119125 29233172 ~ 29238257 (-)
AMCG00013359 NA coding upstream 168617 29282664 ~ 29304026 (-)
G43714 NA non-coding downstream 331635 28676824 ~ 28767352 (-)
G43725 NA non-coding downstream 360214 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 381047 28716291 ~ 28717940 (-)
G43691 NA non-coding downstream 607891 28488842 ~ 28491096 (-)
G43690 NA non-coding downstream 616932 28481732 ~ 28482055 (-)
G43834 znf207,LOC107753267 non-coding upstream 1175 29115222 ~ 29117961 (-)
G43831 NA non-coding upstream 5326 29119373 ~ 29121319 (-)
G43919 NA non-coding upstream 383663 29497710 ~ 29499573 (-)
G44086 NA non-coding upstream 974756 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 1192979 30307026 ~ 30310766 (-)
G43684 NA other downstream 631081 28467312 ~ 28467906 (-)
G43594 NA other downstream 1026200 28068213 ~ 28072787 (-)
G43473 NA other downstream 1529836 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1805914 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 2541663 26553549 ~ 26557324 (-)
G43869 NA other upstream 139349 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 812336 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 926158 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 966567 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 1051770 30165817 ~ 30184424 (-)

Expression


Co-expression Network