AMCG00013355


Basic Information

Item Value
gene id AMCG00013355
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29127471 ~ 29155513 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013355
ATGCTCTCGGCTGCAGGCCGGCTCTGCGGCTCCGTGCTCAGCATCCTGAGGATCAGCACCTCGGGGGCAATCCACCCCTCGGTGCCCGGGACCCCTGACCGCCGGCTGAAGCTGTGCCGGCCCACCGCCAGCTTCTTGCACAGCCCGAAGTCCGAGATCATGGCCCGCACGTGCCCACGGGCGTTGGGCATCGAGACCAGGATGTTGTGGGGCTTGAGGTCTCGACGGCCGTGCGGAGGCCAGGGGCGGCTGGGGGGTGCGTACCTCCTGCAGGGTGGCGGCGCACAGCTCGATGGCAATGTACTGGAACTGCCGGTCTTTCTCCGTGCAGAAGTAGCGGATGACGTTGGGGTGTTCGTCCGATTCCCGGAGCAGCTGCACCTCGCGGTCGGCGAAACTGAAGCACTCCGGGAGGATCCTCTTCACGGCGACGGCGCGGTCGTCAAAGCGGCCTctgccaggagagagagggacggcCTGTCAACACTTTGCCCCTGCGCTCACCCACCGCAGATAGCGGACACGGGAGGTGGATACGGCACTCCGGTTCCAGATGAAGAGTGCAATACGCTGCCAGTCGAGAAATGGACAGAAGCCCACGTGAGCTCCTGGTTAACATCCATAGGAGTTAAAGAACAGTATGTTAAGAAACTTAACGAAGAGGAAGTAGATGGACCAGTTCTAAGAGAAATAACAGAGGAATTTCTCAAACAGCAGACTGGTATGAAATCGGGGCCAGCGCTCTTAATACTGCAAAAACGCAATGAGCTGATTAATTCTCGGCAGGCTCTGGGAAAGGAGCAGCCTTCTCTGAAGGCAAAAATGTCACCGGATTCCCCAGCTGTCGGCCAAAGTGATCAGCAAGAAACGAGTCCAGTAAGAATCAACGCTGTGAAGGGTCAGGACCGTCCAGAGGCAGAAACAGATGCAGCAGCGGGTCAGAGAGCGAGCTTGTTTTCACAAAAGAGAGACTGCAAACCACGGCCATTTGGCAAAGAGGGGATTGACATCAAATATGTGAAACACAATGTGCTGCAGCCAGAATCGGGAGTTGTGGACCTAATTACCCCCTGCCGTGAATACAAATCTTTAACTACAGCAGCTCGTCTGGATCGTCCCAGACTTCAGGCCAAGTTTGCCAAAGAGCTTCTCAAGTTTGGCTCTGGGTGCATGAATGTTCGCTCAAATGGCACAATTTACTTTGGGGTCGTGGACAGTAGAGAAGACCATGGTTTTGTGCATGGTGAAATCATTGGTGTGCCCGTGGAAGAGAAAGACCTCTATGTTGATGCCTTAGATCACATAGGAAAGAGTTTTTCTGCTCCTGACAGTGAGCATGTCTGGCAGTGCATACGCCCACCACAGTTTATAGAAGTTGTTGACATGAATAGCTCGGAAAAACATTTCGTCATTGAGGTTGACATTGTACCTGCAGTTAGCATTGTAAAGGGCAAAGTTTACTCTGTCCGTCTACCTAATTTTAAGGAATCCTCGAATAAGGTTGAAAGGGAAAAGACCACTATTTATCGCAGAGTAGGAGCCAAAACAGAACCTGTTAGTGACCCCCTTGAGTTCTACCAAAATGTAAAAGACAGAGACGCCCAACGGGAGAGAGCAGAAGTTTCACACTTTCGTAACGCACCAGATGTCTGTGAAGACCTGGGGAGAAAACTGATGGTTCTGCTGACTGGTGGCAAGCAATATATAGAAAAGGACAAGTGGTATATTCTTGTTACAAACAAGTTTCCAAGGGAGGATCTGAACGCCATTGATTTCCTTCTGAACATGAagattttctgtgtgtttgattttgaCCCTGACTCCAAAGTCTCTGGATTTTGCAACAAATATCAAGAGCACCATGCAGCAAACTTGCACTTCTTGCAGAACTACAAACTTCAAGGTGGGGTAAGCATCAATGACTTTGTTAGGCATTTGCAATTATTTGAACAGACCAGCTGGATATTTTGCAATGGAAGGAACGATTACCATGGAAATGAAGTCGCCTGTGATGAAATGACCTGGATCAAAACCAAGAAGACCCTCCTGAAGGAAGCCGTGTCACTGATCTGCAAACAAATTCTGCCAAAGGGcttgttttttgtgatttttcttctCATGTCACCCATTGAGCAGCCCCTTGTGCACACTTTCCACGAGTTCTTTGCGGAAATGCAAGGTCACGAAGAcatcatttgcatttcagaatcTGAAGAAAACCATCTGAAATGGACAGGTTTTGCTCAGGCATCTTGCAGCACCGAAATTGTGAACCGTGCAAaacaaaaatatgttgGAGAGGTTCTTCAGAGAGAAGCATACGGGGAAGTTTCCAAGGTTCTCAgggatattttgaaatggagtCCTGAACAGATACCTGTGagctgtatacatatataccatCATCCAGGCAGTGGTGGGAGTACAGTTGCAAGACAGATCCTTTGGAACAACAGAAGGGACCTGAGATGTGCAGTTGTAAAGCCTTCATACCCTGTTGCCAGGGTCTGTGAGCATGCAGTTAAGCTGCGTGAATATGAAGAAAAGGACCCACAGAAATGCCTCCCTGTGCTCTTATTAATAGAAGACAAAGATGAGGAGTACCTTGATGATCTGAGGCATGAATTAGAAGTTGCTGTCACCACTAAGAAGATCAATCAAAACACGCTGTGCTTCGTTCTGTTGAGCTGCACACGATCTCATGATCCAGAACAAATGTGCAGAGCTTACCCTTTACACAATGTTGCCGTGACCCACAAACTAAAATCAGAGGAGAAAAGACAGTTTGCCGGAAAACGGAAGAAACTGGAAGAGCAGTACCAGCCGGAGTTCATCCTGACTTTTGTGTTGATGAGTGAAGAGTTTGAGAAACAGTACATAAAAGATTTTGTGGAACATTTGCTACAAGGCATTGACCACTCATCTCTCACCAGCCGCCTCATCCGATATGTGGCATTACTCAACTGCTACGTGCAGAACTCCTATATCTCACAATCCCACTGTGAAGCTCTGCTCGCATTAACCATTCATATAGACAGATTCCGCCAGCACAACTTCGAAAGATCACTGAGCGAACAGGCAAAACTTGTGTTCGTACACTTGAGAGATGAGAAGACGTACATCGAATCTGTACGTATAATTCATCCCTTAGTTGCAAAAGAAATTTTGCAGCAGCTCTCAGGCAGCCGGCAGCAACAAAGTGTGATCGCCATGGATCTTCTTAAAGAAGATGTGCTCTTTGAGAACAGGTTTGGAAGAGAGGAGTATGTAAAGTTTCTTCGGGATTTGTTCATGAAGCGCTGCAGAATAAGCAAAGGTGACAAATCTGATAGTTTCTTTTCTCCTCTCATTGAACATGTAAGAGAAAAGGAGACCCCCGAAAGGGCTATTGAACTTTTGCATGCAGCCTATAACCGTTTCaataaagatgtgttttttgcTCAGCAGCTTGCAAGACTGAATTACTCCTATGAGAAGTTTGAGGAAGCCAAATCCTGGGCAGAAATAGCAGCAAAAGAGCGTCCGAACAACTCCTACATTCTGGACACTAAAGGACAAGTGTTTAGGAGATGGTTTGATGCTAAATGTAAAGCAGTGGGAAAACTGAACATGACAGctgaaaacacagcagacacaaTCAAAACAGGACTTATAGCGATtgagtgctttaaaaaatgtcagaaaGTAGCAAATTTGGATAAAGACAGCATTAATAATTCAGGTTTTTATGCAGAAGTAGAAATTGGATGTAATTTGTTGAAGCTCATTTCCTCACTCACAGTATTTTCAAATAGAAACAGTGGTCACAGTGAATTTGTAAAGTATCTGGTCACAGATTATATTCCTGAAGAAGTCAGCAAGCCATGGGAGGACTTCCACTGTGATCTTAAAAGCCTTCAGAAGAACATGTATGAAGCCCTTGAATGGATTTCAGAGGACCTGAGCTATTTTCAGACTGATACCAATGCAGAAGAGGAGGAAGGCAGCAGCTCAGAAATTAAGATAAGCAATCCAAAGACCTGGCTCGTGATTAAATCCTCTGTGTTTGGAAAGTATTTCATTGATAAATCATTCTTTTCAGGTAATCAGGCTTGGATGTCAAACCAAGGCACCGCTTTCATGAGACGCATGAAGATATACCACCTTGGTGGTGGCAACATTACTACCATCTTTTCCATCCTGACTGACCAGAAAATGAAAGACCCAATCAGAGCACTTGAAGACATCATATCCTTGTACCCTAATGACCCACACAATGCAAAGCTAGACCAGATGGACCTTGTGAACTACATAGCATCTCAGATTGCTCTGGGATGTCTGTCAACCGTCTCTCCCAAACTTGCTGCTCTTCATGAACTTCAGAAGCTGAGCCACCAGTTTCCAAAAGAGAGACATAAATGTCAATCTAGTGCTCTGTTCTTACTCACTCTCCTTTTCTGGCCCGAAGAGGATGACAGTGAACATGCTagggaaattaaatatgaaattatcATGCCTGCAGCAGAGTTACTCAAAAGATATTACCGTGTCAAAATGAAAGATGTGCCACGAAGAAAGAGAAGGatttacattcactttttcCTTGGCAATGGAAGTGGGTGGAACAGGGTTGTTCACAAGAGCAAGGTGGAAACACACACCAACCTTCTCACAGTCCCTGAGAAGAGAATGAAGTGGCTCCAGGGAGAGGTCTGTAAGGTGTCAGGAATCACTAAGCTGTTGAAACGTGTCCAGGGCTGGACTGAAGATGGCACTGTCTTTCTTAAGGGTCCCGAAAATAAGAAATTCGAAATCCATGCCTTGAATTCCACTTCAGTGCCTTATGGCAATGAAAATGTCACGTTTTATTTGGGCTTTACATTTCAAGGACCAGTCGCTCACAATATCACAAATATAAAAATCTGCCACTTGAGCAATGGGATGAAAATCATGTAAGCTCCTGGATGAAATCAATAGGAGTTAAAGATACTTACATCGAGAAACTTCATGAAGATGAAGTAACAGGACCAGTTTTAAAAGGGCTTACATCAGACTTTCTAAAAACCGAGACACAGATGAAACCTGGTCAAATACAGCTTCTTCTGTCTAAAAGAGATGAACTTATGACATCTATACATCAGCAAAAATCAGTCAACAAACAAACTGGCAGTTCTACAAAATCAGAAGTTAAGGATCATCAAAATGAAcgtaaagaaattaaacatcaagaagtgaaagcagtgaagggaccAGATCCtgaatcaaagaaaaaaactataaaatcgTTACCAGATTCTCAGCCAAACCTGGAATCTTGTGAACCACACCCATTTGACATAACCGACGAAgtctttaaatatgtaaaacacagAGTTCTTCCACCAGAAACTGGAATAGTCGACTTAATAGTGCCTTGCCATGAGTACAAATCTCTTGGTGAAGCAGTAAAGTTAGACAGAACTAGGCTGCAGGTCAAGTTTTCCAGTGAGGTTATCAGATTTGGAGCAGGGTGCATGAATGTTCGAACAAATGGCACGATCCATTTTGGCATTATGGACAGCAAGAACACTTCCTACCAGCATGGAGAAATTATTGGTATCCCTGTGAAGGACAAAGATTTATTTGTTGATGCATTAGACTACATTGAAAGGAGCTTTACAAATCCTTCCCAACAGGCAGATGCAAGGCAGTGTATCAGGCCCCCAAGGTTCATAGAGGTTATTGACAGAGACAACACAGAGACAAGCTGGGTTGTCGAGGTAGACATTGTACCCAAGGCTGAAATTGTTAAAGGCAAACTCTATAGTGTTCGTATACctaaatttaatgaaaaaactaacaaagtTGAACTTGATAAGAAAACAGTCTATCAGAGAGTAGGGGCCAAAACAGTGAGCATTACTGATGAAGATCATGTTGAGTTTATTCAAGGATTGACAGAAAGAGACCGGAGAAGGCAGGAGGCAGAATCCTCAGTTTATCAGCATCCTTCAGAAATCAGAGAGGATCTTGGGAGAAAACTGTGTATGCTTTTGACTGGTGGCAAGAAATACATGGATGATTCTCTCTGGTACATTATTGTCACTAACAAGTTTGAAAACGACAGCCTGAAGAACATCACATTCTTGCTGAACATGAACATCTTCTGTGTGTTGGATTTTGATCCAGACTCTAGAACCTCTGGACTGTGCTGTCGATATCAAACTCTAAAGCGCTCCACACCAAACGTTCACTTCCTGCATGACTACATGAACGACAGTGACTTAATAAAGAAATTGCAGTTGTTTTATCAGCCCAGCTGGATATTCTGTAATGGGCGCAACGATTATCTTGGAGATGAAAAGCCCTGTGATGAAAATACCTGGataaagaacaagaaaaagcaCCTTAAAAAGGCAATAACTACAATCTGCAATGAAATTCTTCCAAAGGGGacttttcttgtgctttttgtcTTGATGTCAGAGGTGGAACAGCCAATTGTTGACACTTTCCATGAGTTCTATGCTGAAATGAATGGCCACGAGGATGTAATTGTCATTTCAGAGTCCAAAGAACACTACAACAAGTGGGCCAGTCTTGCTCAAACATCTTGTCCAACTGAAACACTGAATCAGATCAGCATAGTTGGGATGCAGATGAGTCATGTAGATGTCACACTTCAAAGCATTCAGCCCTTTACCACAACACTGTCTGATAAACACTTACCGGTGTACAGTAAGGGGCAATGTATGCTTACACCTGATGATGAGAAAGCTATGCTGTCCCTTGAAATCCTCGGTATCAATGCTTTCGATGACATCAATATCAAAGATAGTGTTATAGATGTGGAAGacatagaaaaacatttttaccaAGGAGGAAAAGTGAGTTGGATGAATTTTTGGCTGGCAGACAATGGCAAATGTGGAGAGGTTATTCAACGAGATACATATGAAGAAGTGATTAAAATactagaaaacattttaaaagggaacACACTCTCAAGGTCTGTAGCCAGAATAAACATATACCACCACCCAGGTAGTGGTGGAAGCACCGTCGCTAGACAAACCCTCTGGAACAAGAGGAAAGATCTGAGGTGTGCAGTGGTCAAGCCATCTCACCCTGTAGCAACTGTCTGCGAACATGCAGTCTTACTAAGAGAATTTGAAGAAAAGGACATTAACAAATGTGTCCCTGTGCTTCTGTTGTTGGAAGACTATGAGGACCTTGATGAGCTAAGGCATGGGTTAGGAGAGGCCATCTCCTGCAAGAAAATCAACCCATTGACAATATGCTTCATTCTGCTAAGCTGCAAAAGATCCCATGAGCCTGAAAAGATGGTTAAATCCTTTCCTGCAGAATCAGTAGCCATTACACACAAACTGTCAGACCGGGAAAAGAAACTGTTCTCCAAAAAGCGTGAAGTACTTGAGCAAACATTTGAACCAGAATTCATTCTGACGTTTGTGTTGATGAGTGAAGGGTTTGATGAAAAATACATCAAGAACTTTGTGGGAAATATTCTAAAAGATATTGATCATTCATCTCTTGAAACACACTTAATTGTGTATATAGCGTTGCTCAGTTGTTATGTGCAGCACTCTTATATCTCTGTGTCACATTGTGAAGCCTTTTTGGGCTTAGGCATCTGTGTAGAACCAATACGCCAGAGTTCATTTGAAAATGCCCTGAGTAAAGAAGCAAGGCTTGTTTTGATACACTTCAGGGACAGCATCACTTTTGTTCGTATAATTCACCCTTTGGTGGCACAAGAAATCTTAAATCAACTGTGTTCAGACCAGCAGCAAAGTATATTTGCTATGGCCCTTCTTCAGGAAAAAGTCCTTTTTGAACACAGGTTTGGAAGGAATGACTTTTTGAAGTTCATCAGAGATCTGTTCATTAGACGGTACAAGAGAAGCAAGGGAGACAATGTTGACAGTTTATTTTCTCCTctcattgagcacgtctgtaatGAGGAAAACAACCCACCCAAGGCCATGGACCTGTTAAAATCTGCCTACACCTCTTTAGGAAAGGACCCTTTCCTCGCGCAACAGCTAGCACGACTCTGTTCAACACATGAAAAATTTGAAGATGCAAAACATTGGGCTGAAGTAGCAAAATCACATTTGCCACATGATTCTTTCATTTTGCACACAGAAGCTCAGGTCTACAAGAAATGgttcaattttaaattggaCTCGGTAGACAAAAAGGACAGGACCCCTGAGAACACTGCCGAAATAATTGAAATGGCTCTAAAAGCAACAGCATGTTTCAGAGCCTCTGAAAAAGCAGCAGAGTTGGAAGAAGATCGCATGAATAACACTGCCTATTTCGGAGAGGTGGATGTTTGCTGCCGTTTATTGCAGCTCATTAAATCAGTgaatgttttttcaaatgaaattacTAAGCTTCTCCACTATCTGCTGACAGACGATATTccagaagaaatacaaaaacccTGGAATACATTTCACAGCCACCTAAAAGGACTTCAAAATCGTATATATTATGCTCTTGAATGGATTTCAGAAGACCTGAGCTACTTTCAAACTGacaaaaatgaagaagaagaggaggttATGAATAAAGAGCTAGAACATCAATACAATCCCAGAAAATGGCTTCTGAGAAAAACCCAAGTGTACGCTGAGTTTTTCTGTGAGAATGATCTGTCAGCCAGCCAAGATCAGGAGTTTGAATCCCCAGATAATATTAGTCCGCTAAGGAGACAAATGAGGATTTACAAACTTGGAGGTGGTAATGTAACTACCATATTTTCAATGTTGTCTGATCAGAAAAATGAAAGGTGTGGGCAAAAACTGGAGGAAATCATAAGTATGTATCTTGATCCACAAAAGCTGGACCTCAGTGACttggcaaattacattttgtgtcaaATTGCATTAGGATGCGTTTCACCTGGGTCCCCCAAACTTGCTACCTTCCGACAGCTTCAGGAACTAAGCTTGCGGTTTAGCAAGGGACGCATTAACACATGTCTCACAAGTGCCTTCTTCCTGCACACTTTGCTGTTCTGGCCCGATGAAATGCAAGACAAAGAGCCAAATGAAAGGAATAATAAAATTCTCATGGCAGCAATTGACAATTTGAAAAGGCTCTATGAGCATAAAATCAAGAATGTTCCTTCAAGAAAGAAGAGAATATTCACTCATTTCTTCCTGGGAAACGGAAACGGCCTTCACAGGATCGTTCACAGAAGCAGGCTGGAGAAGTGCATCAAAGGGTCACTGAATGAAAGGAGACTGAAGTGGCTCAATGGGGAGGTGTGGAAGACCCCAGAGGTCACACAACTGCTGAAACGTGTGGAAGGATGGACCGAGAATGAAAAGCTGTTTGTCTGGGGCAGCTGCAAACACAGCAAGATCAAAGTTATCCCTCTGCATTCTGCTTCGCTGCCTCATATGAATGAAAATGTCTCTTTCTATCTTGGATTTTCCTTCAATGGCCCAGTTGCCCTGCACATTAACTAATAGGTTCTGCTCTACCACAATGACTGCTGTAGATGTGCTATCGTGAATTATACATCTGTGCACAcctattaactttattttaattgcttatgtcatttttatttgttgtacaaaattgtaaaaaataatatataatccCCACTCTCGACCATGTTACTTTTGCACTATGTAATCAACTAAGTTCCCAGTAAGGTAACAcctgtataataaatacaataagttTTGATCTCTAACCATGGATGGTTTTGTTATggacaaatgcatttaattgttgGGTTCCCTTTTTTGATGATATACCAAAGAAATTAACTCTATTCACATCGGGGCTTTGCAACCCTGCTCATTGATAGCAGTAGGATATCTCGGATTTCACTGCAGTTGTGCTTTGAGCTATTTAACCAGTTATTGCCTATTTAGGGTCTGTAGCTATTGATAATATTATACTATCTGTAACCACAGGCCTATGGCACTTCAGTACTGGGGTTGCAGACTGCTGTTCTGTATGTTGAGATAATTGctattgtgttcttgttttacAATCTATATGGAAATGTTGTTAGAACTTATTTTTTACTATTCTGCCATTGTCccatatgttaataaatacattgtacataTTTAA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013355 True 10086 mRNA 0.43 6 29127471 29155513

Neighbor

gene id symbol gene type direction distance location
AMCG00013353 NA coding downstream 13424 29098987 ~ 29114047 (-)
AMCG00013347 aanat coding downstream 64231 29061888 ~ 29063240 (-)
AMCG00013349 LOC105417629 coding downstream 131091 28991437 ~ 28996380 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding downstream 138466 28974690 ~ 28989005 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding downstream 349997 28771933 ~ 28777474 (-)
AMCG00013354 ern1 coding upstream 5717 29161230 ~ 29173911 (-)
AMCG00013357 NA coding upstream 22815 29178328 ~ 29202068 (-)
AMCG00013358 NA coding upstream 77659 29233172 ~ 29238257 (-)
AMCG00013359 NA coding upstream 127151 29282664 ~ 29304026 (-)
AMCG00013360 LOC106606716,LOC106601764 coding upstream 284486 29439999 ~ 29440470 (-)
G43831 NA non-coding downstream 6152 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 9510 29115222 ~ 29117961 (-)
G43714 NA non-coding downstream 360119 28676824 ~ 28767352 (-)
G43725 NA non-coding downstream 388698 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 409531 28716291 ~ 28717940 (-)
G43919 NA non-coding upstream 342197 29497710 ~ 29499573 (-)
G44086 NA non-coding upstream 933290 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 1151513 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 1229173 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 1378458 30533971 ~ 30539317 (-)
G43684 NA other downstream 659565 28467312 ~ 28467906 (-)
G43594 NA other downstream 1054684 28068213 ~ 28072787 (-)
G43473 NA other downstream 1558320 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1834398 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 2570147 26553549 ~ 26557324 (-)
G43869 NA other upstream 97883 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 770870 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 884692 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 925101 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 1010304 30165817 ~ 30184424 (-)

Expression


Co-expression Network