AMCG00013356 (ern1,LOC106601756,LOC106606681)


Basic Information

Item Value
gene id AMCG00013356
gene name ern1,LOC106601756,LOC106606681
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29150242 ~ 29156585 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013356
ATGCaAGGCCGCTTTGACGACCGCGCCGTCGCCGTGAAGAGGATCCTCCCGGAGTGCTTCAGTTTCGCCGACCGCGAGGTGCAGCTGCTCCGGGAATCGGACGAACACCCCAACGTCATCCGCTACTTCTGCACGGAGAAAGACCGGCAGTTCCAGTACATTGCCATCGAGCTGTGCGCCGCCACCCTGCAGGAGGTACGCACCCCCCAGCCGCCCCTGGCCTCCGCACGGCCGTCTGATGAGAGAGGATATCGACCGCGATATGTGGAGCAGAAGGACTTCGACCGTCACGGGCTGGAGCCGGCCATGCTTCTGCAGCAGACGATGTCAGGACTGGCCCACCTGCACTCTCTCAGCATCGTACACCGAGACCTCAAGCCCCACAACATCCTGGTCTCGATGCCCAACGCCCGTGGGCACGTGCGGGCCATGATCTCGGACTTCGGGCTGTGCAAGAAGCTGGCGGTGGGCCGGCACAGCTTCAGCCGGCGGTCAGGGGTCCCGGGCACCGAGGGGTGGATTGCCCCCGAGGTGCTGAGCGAGGACAGCAAGGACAACCCAACGTGCGCCGTTGACATTTTCTCCGCCGGTTGTGTGTTTTACTACGTGGTGTCTGAAGGAAACCACCCCTTTGGCAAGTCCCTGCAGCGGCAAGCCAATATCTTACTGGGCGCCTACAGCCTCGACCGGTTACAGCCGGACAAACACGAAGACCTCGTTGCCACTGACCTGATCCTCAGGATGCTGAGCACGGAGCCGCAGAGCCGGCCTGCAGCCGAGAGCATCCTCAAACATCCCTTCTTCTGGAGCTTAGAGAAGCAGCTCCAGTTTTTCCAGgatgTCAGTGACCGGATTGAGAAGGAGCCGCTGGACGGCCCAATTGTGAGACAGCTGGAGAGGGGGGGCCGGAGCGTGGTGCAGGGCGACTGGCGGGAGCATATCACTGTGCCGCTGCAGACAGACCTGAGGAAGTTCCGGTCGTATAAAGGGGGCTCGGTGAGGGACCTCCTGCGCGCCATGAGGAATAAGAAGCACCACTTCCGGGAGCTGCCGGCGGCCGTGCAGGAGACGCTGGGCTCCATCCCGGAGGACTTTGTGCGGTACTTCACCTCGCGCTTCCCCCACCTGCTCCTGCACACCTACCTGGCCATGCGCACCTGCCGGCAGGAGAGGCTCTTCCAGCCGTACTACCACTGCGCCGAGGATctgacccccacccccctgctaCCGCCACCCCCGCCGCCGCCACCACCCCTGGTACCGCCGCCGCCCCCGGCTCCCCCCGAGACCGAACCCAGGGACTCCGAGAGCCAGGCGTGA

Function

symbol description
ern1 Predicted to enable endoribonuclease activity; protein serine/threonine kinase activity; and unfolded protein binding activity. Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be part of IRE1-TRAF2-ASK1 complex. Is expressed in brain. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human ERN1 (endoplasmic reticulum to nucleus signaling 1).

NR:

description
PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006468 protein phosphorylation biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0005524 ATP binding molecular_function
GO:0004540 ribonuclease activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08852 ERN1; serine/threonine-protein kinase/endoribonuclease IRE1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013356 True 1320 mRNA 0.64 9 29150242 29156585

Neighbor

gene id symbol gene type direction distance location
AMCG00013352 znf207 coding upstream 28807 29115453 ~ 29121435 (+)
AMCG00013351 ube2o coding upstream 58635 29080000 ~ 29091607 (+)
AMCG00013350 NA coding upstream 81840 29067830 ~ 29068402 (+)
AMCG00013344 NA coding upstream 90602 29033142 ~ 29059640 (+)
AMCG00013346 NA coding upstream 121034 29022007 ~ 29029208 (+)
AMCG00013363 prkca,LOC107664393 coding downstream 411904 29568489 ~ 29573439 (+)
AMCG00013365 LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241 coding downstream 429666 29586251 ~ 29627558 (+)
AMCG00013367 cacng4,LOC107548710 coding downstream 541247 29697832 ~ 29710210 (+)
AMCG00013368 NA coding downstream 565060 29721645 ~ 29724010 (+)
AMCG00013366 LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600 coding downstream 576267 29732852 ~ 29741055 (+)
G43712 NA non-coding upstream 411489 28738123 ~ 28738753 (+)
G43673 NA non-coding upstream 760282 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1732455 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 2139591 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 2219989 26872821 ~ 26930253 (+)
G43799 NA non-coding downstream 114 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 20466 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 22513 29179098 ~ 29202721 (+)
G43895 NA non-coding downstream 277465 29434050 ~ 29446698 (+)
G44182 NA non-coding downstream 1299087 30455672 ~ 30457671 (+)
G43802 NA other upstream 45665 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 464104 28676542 ~ 28686138 (+)
G43682 NA other upstream 661459 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1077443 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 1214304 27928708 ~ 27935938 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 484038 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 729177 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 906795 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 927059 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 1062325 30218910 ~ 30229021 (+)

Expression


Co-expression Network