AMCG00013359


Basic Information

Item Value
gene id AMCG00013359
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29282664 ~ 29304026 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013359
GCGGGGCTGCGCGCGCTGCCTGCGGGACTCGGCACTGGGGCAGAGCGGGGGACGCGGGCGCGTttagggggagagagggaaaaagaggCACTGTGCGGGACCCCCCTGTCGGCACGGGAAAACAAAGGAGAAGCCAGTGCACGGGACCGCGGCGCGGTGGCAATTGTGGATTACTTTTGATTCTGTGTTTTGCGGGTGAAAaggagagaggaggagaggagctCAGAAGATCCCCCGCtgactagagagagagagtgagtgagtgagagagagagagaggatcaCGAAGGAGGAGGAGGCGAGAAGACCGTCAGTACCTCCAGCTCGGAGCCATGAGCAGGTTTCTGGCGGAGCACCTCAGCAGCAGCTTCAGAGAAGATGCCCCTCGGCCGCCGGTGccgggagaggagggagaggcgTCCGGCCCCCATCCCAGCAAACTGTCCGCCATGAGGTCCCACAGCCACCAGGCTAAGCCCGCCGTGGTGGTCGCGGCGGCGCCCCCCGGGTCCACACCGCGCCGCAACGAGGACGGCCTGGGGGAGCCCGAGGGCAGCGCCTCCCCGGACTCGCCGCTGGCCCGCTGGACCAAGTCGCTGCACTCGCTGCTCGGGGACCAGGACGGCGCCCACCTGTTCCGGACCTTCCTGGAGCGGGAGAAGTGCGTGGACACCCTGGACTTCTGGTTCGCCTGCAACGGCTTCCGCCAGATGGACCTAAAGGATACCAAAACGCACCGGGTCGCCAAGGCCATCTACAAGCGCTACATCGAGAACCACAGCGTGGTGGCCAAGCAGCTCAAGCCGGCCACCAAGACCTACATCCGGGACAGCGTGAAGCGGCAGCAGATCGACTCGGCGATGTTCGACCAGGCGCAGACCGAGATCCAGAGCACCATGGAGGAGAACGCCTACCAGATGTTCCTCACCTCGGACATCTACCTGGAGTACGTGCGCACCGGCGGGGAGAACCAGGCGCACGGCCACCCCAACGGGCTGGGCAGCCTGAAGGTGGTGTGCGGGTACCTGCCCACCCTGaacgaggaggaggagtggagcTGCCAGGACTTTAAAGCCAAGGCTCTGGCCTCTGTGGTCGGACTGTCTGCCAAAGCACTTCGGGCAACCGCCCCCCTGAGGACCGCCGAGACGCTGGAGAATGGATACAGGTCATACCGGCGCGTCGATCCGGTCAACCCCTATCATGTCAACTCGGGGTACGTCTTCGCTCCGGCCACCAGCGCAAATGACAGCGAGATCTCCAGTGACGCCATGACGGACGACTCCATGTCCATGACCGACAGCAGTGTAGATGGCATCCCACCCTACAAAACTGGGTCCAAGAagcacctgcagagagagatgcatcGCAGTGTGAAAATGAACGGCCAAGTTTCTCTACCTCACTTCCCTAGAACCCATCGCCTGCCCAAGGAGATGACACCCGTGGAGCCGGCCACCTTTGCCGCGGAGCTCATCGCCCGGCTGGAGAAGCTCAGGCAGGAGCAGGAGACCATGAGCAGCCTGGAGGAGCGGCTGCAGCAGATTAAAGAGgaggaggagagagacgaTGGAGAGGTGTCTTCTGGGAGCGGGCAGCTCGCCTCCGTCACCAGCACAGCCCACCACCAGACCCACCCCCTGGGGCTGCTGCCCGCCGGCTCGTGTGAGGAAGACCCCCAGGCCATCCTGGACGAGCACCTGTCCCGGGTGCTGAAGACGCCTGGGTGCCAGTCGCCCGGGGTGGTCCGTCACTCCCCGCGCTCCCGCTCCCCAGACCGCCACCACCACTCGCTCCACCACGCCAGCGGCACCAAACTGCAGCCCCCCATCCTGGGCTCCCCCTCGCTGCCCTACCCTCTGAACTGTGGGTCTGCAGGGGCCGGCAAGGCTTTCCTTGCCAAGCAGGCCACCAAGCACATCCACCACCACTACATCCACCACCACGCCGGCCCCAAGACCAAGGAGCAGATCGAGGTGGAGGCGGCGCAGAGGGTCAAGTGCCAGTGCCCAGGCAGTGCCGACTACTGCGCTTACCCCAAGTGCAGGAGCCATGGCAAGGAGCAGGGTGCGGGCCCCACGGAGCCGTTCACATTCGGCAGCCGGTCCAGCACGTTGTCCAAGAGAGTGTGCAAAGCCGGCGACGGAGGGGCCCCTCTGaatggggaggtgggggggcaggcgACCACTCCCCTGCAGCTCCCCACGGACGGCACCGACCGTTCGCAGAACGTGTGGCAGTGGATCCTGGAGAGCGAGCGGCAGAGCAAGCACAAAGCCCACAGCACCCAGGGCACCAAGAAGGGCTACAGCGTGGACTCGTCGCGCGGTGCCCCCGGGGACCGGTCCGGCCGGCAGCACACCTGGGGGGGCAACAGCCACGCGCGGACGCACCAGCCCGCACACCCCTTTGTCCAGGACCCGGCCATGCcgcccctgcccccccccaacactctggcccagctggaggaggcctgccGCAGACTGGAGGAGGTCTCCAAACCCCCCAAGCAAAGATTCAAAGAGCCAAAGAAGCACGCGGGGGCGCATGGCGCGCTGGGCACCGAGCTGGTCGTCACTTACTTCTTCTGCGGGGAGGAAATCCCGTATCGCAGGATGATGAAGACGCACAGCTTGACATTGGGGCACTTCAAAGAACAGCTGCGCAAAAAAGGCAATTACAGGTACTACTTCAAGAAAGCCAGCGACGAGTTTGAATGTGGAGCGGTCTTTGAGGAGATCTGGGATGAAGGAACGGTCTTGCCGATGTACGAGGGGAAGATCTTGGGCAAGGTGGAGCGGGTTGACTGAAAACGAACCACAAGCTAACCAACCACAAGACctgcaagacagaaaaaaaaaaaaaaaagacttgaagTTTTTAAGCTAATGTGGAGACCACAGGCACCATGCGTGACAAGCTATTGAAGGAGCCAATGAAGTATGGTGAGGAGCAGAGTCGAGGGAGAGGACTTTAAACCGATCAGCCTTAGACCTGGAGGAGGTGTATCAGAGACTCACGGttgggaaagagagagagagagagagagagagagaggagggtcCGCTTCACAGGAGACCCCTGTCGTCGTCTGGGCCACGACCGGAGAGAACAAAGCGCTGGTATctattatgaccactgactgGCAGTCGGAGAAGCTGACCGTTCACACGAAGACTGTCctgcacaaaaaaaaacgtTCGGCTTCCTGGGGATCCACAACGTACcaacatcaaattaatattgCGTGTCTGCTTTTGTTGTGCTTGTTTTaagtgtgcgtgcatgtgtaggtgcatatatatgtatattaatatatatatacgcattTACACCcatgtatgcatatgtattatgttacttttattataattaaagttattaatatttattaaactataccGCCCTCACCCCCCACTCCCCAGTGTCCAGATGTTTGGACAAGCTGCTTTGAAAGTTGAGACAAGATAACAAGACAAGGATGTAGTGGGTCCAGCCCCCCCGACCGAAACGGACGCCATGAGAGTGTTTTAGGATAGGATTGCCTCTGGCCTACAAGTCAACCAGTCTTAATCTATGCTGCTGATGTTTAATGGGTTCAAAGTttagttgtttgtgtttttgttttgttctggaatcagatttttgttttccccgTCAGAGCTCCATCTTATGTTGCTTCTAGTGCCTTTTGTGTGGCCCAGGCATTGCACAGGAAAATGTAAGGATTGAAAGAGTCCTGGAGCACAAATCCTAACTCATGAAAAAGTCAAAACCTATAGGAcgtgtttacattttaaaagcaagagAAAATAAACGATACAAGGAAAAGAGCCAGCACACCAAAGTGATCAAAACGATCACCCTCTTCAGAAACCGTTACCGGtggctgtttttgtgttgttttttttcttcttcctttcaaACCGAAGACCGTATCAACAGTATTTCTGAACCGATCCCAAATATATTCACGCAACAATTtgtttggagagagaggaaaaaaaaaacgaagtCACTCTATggttgaattttgttttttgtgttgtattataTTCTATAAAAAGCTCTGTACATACTGTAATTATGCATTGTAAACAGcaaaggaaaatgaatacaCTACTGCTAGTGTTTTATTAGTACAGTACCTGTGCCTACATGGTGGTCTTCGCTGTGTATCCCCCTGAATTCAGGGTTTATTCCCTCGATTTACTGAAgggttttatgtttaaaatatattttttatgcttttattaCAAGTCttgtaatcatgttttattttattataaattttgttttgccatggcatttttttttgtcctacttatactgtaaattatgcattatataaaaAGAGTTTCAATTAAAGATTACTTGGtactttaattattgtaattattaagaGATGTAGCCT

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0090244 Wnt signaling pathway involved in somitogenesis biological_process
GO:0008219 cell death biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0045668 negative regulation of osteoblast differentiation biological_process
GO:0001957 intramembranous ossification biological_process
GO:0005881 cytoplasmic microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K04385 AXIN2; axin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013359 True 4414 mRNA 0.55 10 29282664 29304026

Neighbor

gene id symbol gene type direction distance location
AMCG00013358 NA coding downstream 44407 29233172 ~ 29238257 (-)
AMCG00013357 NA coding downstream 80596 29178328 ~ 29202068 (-)
AMCG00013354 ern1 coding downstream 108753 29161230 ~ 29173911 (-)
AMCG00013355 NA coding downstream 127151 29127471 ~ 29155513 (-)
AMCG00013353 NA coding downstream 168617 29098987 ~ 29114047 (-)
AMCG00013360 LOC106606716,LOC106601764 coding upstream 135973 29439999 ~ 29440470 (-)
AMCG00013362 NA coding upstream 140421 29444447 ~ 29445872 (-)
AMCG00013361 NA coding upstream 141915 29445941 ~ 29449481 (-)
AMCG00013373 LOC106564877 coding upstream 442201 29746227 ~ 29794126 (-)
AMCG00013372 psmd12 coding upstream 492557 29796583 ~ 29803243 (-)
G43831 NA non-coding downstream 161345 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 164703 29115222 ~ 29117961 (-)
G43714 NA non-coding downstream 515312 28676824 ~ 28767352 (-)
G43919 NA non-coding upstream 193684 29497710 ~ 29499573 (-)
G44086 NA non-coding upstream 784777 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 1003000 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 1080660 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 1229945 30533971 ~ 30539317 (-)
G43869 NA other downstream 28348 29253396 ~ 29254316 (-)
G43684 NA other downstream 814758 28467312 ~ 28467906 (-)
G43594 NA other downstream 1209877 28068213 ~ 28072787 (-)
G43473 NA other downstream 1713513 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1989591 27273229 ~ 27293073 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 622357 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 736179 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 776588 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 861791 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 982616 30286642 ~ 30290867 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G330301 NA misc CI01000112 null 3758244 ~ 3773774 (-)