AMCG00013365 (LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241)


Basic Information

Item Value
gene id AMCG00013365
gene name LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29586251 ~ 29627558 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013365
ATGCAGATCTCCATGGTGACGCTGGAGTCCGATATGTTCGGGCCGCCTGTGCTTTTAAAGAGAGCCGAGGTATTGGCAGACCATCAGGGAACCCACACCCCACTCCCTGCTTGCTTTCTATCCACTGGGCTCATCGGGCTCTTCCTCAATATGAGCACTTCCTGTGCTGAGATGGGCGAGGCAAGGAATCTGATTCCCATGGATCCCAACGGGCTGTCGGACCCCTACGTCAAGCTGAAGCTCATCCCCGACCCCAAGAATGAAACCAAGCAGAAAACCAGGACCATCCGTTCCTCGCTGAACCCCAACTGGAACGAGTCATTCACATTCAAGCTGAAGCCGAGCGACAAGGACCGGCGCTTGTCGGTGGAGGTGTGGGACTGGGACAGGACCACCAGGAACGACTTCATGGGCTCGCTCTCCTTCGGCGTCTCGGAACTCATCAAGTCTCCCGTCTGCGGCTGGTACAAGATGCTAAACCAGGAGGAGGGCGAGTATTACAACGTGCCCATTCCCGAGGTGGACGATCCCAACCTGGAGCTGATGCAGAAGTTTGAGGACTGCCACATTAATATCCACTTCCTCAAGCATCCCCCCATCCCATCCTCCATCCGCTGCCTGGACGGCTCCGTGTCCATCTCCCATCGTCTCACCTGCTCTGCGCCCATGTTGGCCTCACAGCGTAAAGCCCGGCTCGGCCCAGGGAAGAAAGTAATCAGTCCCCCGGAGGACGGCAAGACGAGATTCCCATCGAACAACCTGGACCGGGTCAAACTCACAGACTTCAACTTCCTGGCGGTGCTGGGCAAAGGCAGCTTCGGGAAGGTGATGCTGGCGGAGATGAAGGGTTCAGACCAGCTGTACGCCATCAAGATTCTGAAGAAGGACGTGGTCATCCAGGACGATGACGTGGAGTGCACCATGGTGGAGAAGAGGGTCCTAGCCCACCGGGACAAGCCCCCGTTCCTCACGCAGCTGCACTCCTGCTTCCAGACGGTGGATCGCCTATACTTCGTGATGGAGTACGTGAACGGCGGAGACCTCATGTACCACATTCAGCAAGTGGGGAAATTCAAGGAACCGCAGGCAGTGTTCTACGCAGCAGAGATTGCTGTTGGCTTGTTCTTCCTGCACAAGAAGGGAGTCATATACAGGGACCTGAAGCTCGACAACGTCATGCTGGACTGCGAGGGCCACATCAAGATCGCCGACTTCGGGATGTGCAAGGAGAACATGTACGATGGTGTGATGACCCGGACGTTCTGTGGCACCCCCGACTACATCGCACCCGAGATTATTGCGTACCAGCCCTACGGCAGATCGGTGGACTGGTGGGCCTATGGAGTGCTATTATATGAAATGTTGGCCGGGCAGcCCCCTTTCGACGGAGAGGATGAGGACGAACTCTTCCAGTCCATCATGGAGCACAACGTGTCGTACCCTAAGTCGCTGTCCAAGGAGGCGGTGTCCATCTGCAAAGGACTGATGACCAAGCACCCCTCGAAGCGGCTGGGCTGTGGGCCGGAGGGCGAGCGTGACATCAAGGAGCATGCCTTCTTCCGCAGGATCGACTGGCAGAGGCTGGAGAACCGCGAGATCCAGCCGCCATTCAAACCCAAAGTGGGTGGCAAAGCCGCCGAAAACTTTGACAAGTTCTTCACGCGCACCCAGCCCATGCTGACGCCCCCCGACCAGCTGGTCATCGCCAACATCGACCAGGCTGAGTTCGAGGGCTTCTCCTTCGTCAACCCTCAGTTCATCTATCCTGCCATTCAGAGCGTCATATGA

Function

NR:

description
PREDICTED: protein kinase C alpha type-like isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K02677 PRKCA; classical protein kinase C alpha type

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013365 True 1788 mRNA 0.57 16 29586251 29627558

Neighbor

gene id symbol gene type direction distance location
AMCG00013363 prkca,LOC107664393 coding upstream 12812 29568489 ~ 29573439 (+)
AMCG00013356 ern1,LOC106601756,LOC106606681 coding upstream 429666 29150242 ~ 29156585 (+)
AMCG00013352 znf207 coding upstream 464816 29115453 ~ 29121435 (+)
AMCG00013351 ube2o coding upstream 494644 29080000 ~ 29091607 (+)
AMCG00013350 NA coding upstream 517849 29067830 ~ 29068402 (+)
AMCG00013367 cacng4,LOC107548710 coding downstream 70274 29697832 ~ 29710210 (+)
AMCG00013368 NA coding downstream 94087 29721645 ~ 29724010 (+)
AMCG00013366 LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600 coding downstream 105294 29732852 ~ 29741055 (+)
AMCG00013371 pitpnc1,LOC106926703 coding downstream 227335 29854893 ~ 29860612 (+)
AMCG00013370 pitpnc1,LOC106564871,LOC108424775 coding downstream 233406 29860964 ~ 29869372 (+)
G43895 NA non-coding upstream 139553 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 383530 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 407985 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 427758 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 434917 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 828114 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 1106978 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 1109251 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 1144823 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 1146624 30774182 ~ 30774548 (+)
G43802 NA other upstream 481674 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 900113 28676542 ~ 28686138 (+)
G43682 NA other upstream 1097468 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1513452 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 1650313 27928708 ~ 27935938 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 13065 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 258204 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 435822 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 456086 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 591352 30218910 ~ 30229021 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004737 prkcea coding NC_007123.7 CM002896.2 25640480 ~ 25770232 (+)