AMCG00013366 (LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600)


Basic Information

Item Value
gene id AMCG00013366
gene name LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29732852 ~ 29741055 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013366
ATGACGGAGGAGGTAGACAGTGCTGTGGCTCCACAGGCTGCTAGCTCCTCGCCTCGTGATGAAAACCAGCCCAGGAGGAGCCCACTACACCATGTGACGAGCCCGAACAGCTCTTCTGTCCATAACGGCACCGCTACAACCGTCCCGCTCGCTCATAACTGCTCCTATTTCAAACACTTCACTTCGGGAGAGGAGGCCGAGATGTTTGAAGTTAAAACCCAGAAAGAGTACAGCATCTCGGCTGCCGCCATCGCCATCATCAGCGTGGGCTTCATGATCCTGGGAACCATCTGCATCCTGGTGTCCTTCAAGAAGGGCATGGACTACCTGCTCAAGCCAGCTGGCATGTTCTTCACCTTCGCAGGCCTGTGCACCATTATCTCGGTGGAGGTGATGCGCCAGTCGGTGAAGCGCATGATCAACAGCGATGAGACCATCTGGATCGAGTACTACTACTCCTGGTCGTTCGCCTGTGCCTGCGCCGCCTtcgtcctcctcttcctcagcgGCATCGCGCTCCTCCTCATCTCCATGCCCCAGATGCCCAGGAACCCTTGGGAGACTTGCATGGACGCCGAGCCGGAGCCCATTGAGTAGCGCCGCCCGGCCCAGCCTGACCCAGGTGCAGCCACAGCCATGGCACCGCCAATCTCATCCTGCACTCCACGTCTACTTAgtcaaaggaaaaacaaaaaaagatctGCTCAAGGATGGCAAGGGAGATGTTGAGCGACAGTGCTAAAGAATAGAACAACATTAATACTCAAAACCTGCAATGAACTGGTGTAATAATTACTTAAAGGTTATatgtctttttttcctgttaatcAACTGTTTCTAACCTGATCGTTGAGCTTTGTTTTGTAGCAGGGGAGCATCTGTCAACCCCTCACACTGACGCGGTGATCTGGTGTCCAGACACACCGCTGTCGTGAAACCTCGTGCCCCCCTACCGTGTCACTCCCTGTCGACGCCGTGCCCCCTCGTCTGGCTGTCCACATCGCAAAAATCGCAGAAGCATCTCGTTCTGCAGCTTGGGGCGACTCTATGAAAGTTATAGCCCTGAAGCATTTTAGTAATACAAATGCGATTTATTTTTGCTTACTTTCCTATCCTTCACTCTCTGTCTACTTCTCTTTTTAAACTCGACACAGATCGCAGCAGCTGTAACGTTACACACTGATTTGAGAAAACGGTGTCAGACGATCACTGCTGCAGCAGAGAGGCTGCCGTCTGCGGCCCATGGACCGGTTCGGTTTTATCTATGGGGGGTGCGGAGCTGAATGCTAATGCCTGGGCTTCAGTAACAACTGAGCACTTGTGAGAGAACTGGACAGCATTCAGTATCTGCAGGTGCAGATACACTGGCACACGATTCAATGGGTTATAAAGTTTCTTTTTACAGGAAACAAGCGGGCgtaattccttttcttttcgAGCCGGCATTAAGAATCACATGGCCATTTTTTGGGGTACTTTTTTAGGCCAGGATttgcaaaaacattaataaaaaaaaaaaattgtttagaTCTGTCAACAGTTTGTGATAAAAGCCGATCCATCcatttggtttgtattttctCATCCTCCGctgaaaagtcattaaaaagcaatatttgaGGGGATATAGGATATTTCCAGTCCAGTCTTCATTTAAATCCTGTCACTGCACCCCCATTATATTGTACACTAACTTGAATATGCATCTCATTCTCCTAGATAACTATCTAGATGTTTTAAAGTGCAGGTTCCAAATGCAGACGATCTTAATTAATTCTATATAACTGAtgaattacttgtttttttgttttccacagcagGTGGAAGCACATCAGGCCGACCACAGGCTGCACGGCAAGTAAATGAGGTGTAAATCACATTAATTAGAGATCAATTAAAAGCTGTAGAAATGTGCTTTACACCTCACTCACCTGTCGTGCAGAATTCAGCTCTGATCTGCAGGTGGGCTTTATTTCCCTCCCCAAAACGCTTTAACAAACATGACTCCTCTGGCTTTCGCTTAGCAAGGTGTCCTGTTGGGATGATTTCCTCCCCCAATGATGTTTCTCTGAATAGATGGGGTGGGAGAGAAGATGCATCTTACATGACCGTATAGAAAGCATAAAAGACGCACAAAGCATTAAACCTGGTTTGAGCAGCTGTATTTTTCTCTCAACGGTTATTTTGGCATGCGACCATACAGAAGTGTATCTTAGTGTAGGAAACCAGCTGTATTTTCTTGTACTGGTCACTGTAATGTATctatgcttttaaatgtatttgtaatggaaataaacacacagagcacaaaCAGGTATTGACAAACTCTCCTCTGAAGCCTCTTGTCTGTGTCACTCCACTCCACTAACTGCAGGGGGGGGAATTGATCAAAACATGCTTTGCTGCctcaaaaaagggaaaagcaaTCAtctcccattttctttttcctgagCTTAAACCAATTACAGTTGATGAGCAGCTAAAACTTTTAGACCCAGAAAAAATTTACAGAAACTTTTAAGCTGAGGGTCAAATCAAGGAAAAGTTACAGCAGCTTTCCAAGGCCAGGTCCTTGTGCTGGATGTGGGAAAGAGGGAAATGTCAGAGAATAATAAACCgaataaagaataaacaaacctgCACTTTCCGAAAGAGGAAACACTGATATGCCGATAGCGTTTTCTTTTTCCATCAGCCTGCAATAAAGGGCCTTGCTGaatcatttataatgtttttgccTTATTCAACCGCAACGCCTTTGTGCGCAGCCAAGAACGCACCTTCACAAATCAAACGCACAAATCGAAACGTACAGAAGACTGTATCCAGGCCCCCCACCTCGCCGCGCGGATGAAAGGGAGAAAGTGTAGCG

Function

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-1 subunit-like

GO: NA

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013366 True 2872 mRNA 0.46 4 29732852 29741055

Neighbor

gene id symbol gene type direction distance location
AMCG00013368 NA coding upstream 8842 29721645 ~ 29724010 (+)
AMCG00013367 cacng4,LOC107548710 coding upstream 22642 29697832 ~ 29710210 (+)
AMCG00013365 LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241 coding upstream 105294 29586251 ~ 29627558 (+)
AMCG00013363 prkca,LOC107664393 coding upstream 159413 29568489 ~ 29573439 (+)
AMCG00013356 ern1,LOC106601756,LOC106606681 coding upstream 576267 29150242 ~ 29156585 (+)
AMCG00013371 pitpnc1,LOC106926703 coding downstream 113838 29854893 ~ 29860612 (+)
AMCG00013370 pitpnc1,LOC106564871,LOC108424775 coding downstream 119909 29860964 ~ 29869372 (+)
AMCG00013369 NA coding downstream 135119 29876174 ~ 29883122 (+)
AMCG00013374 kpna2,LOC108432045,LOC108261381 coding downstream 198100 29939155 ~ 29944680 (+)
AMCG00013379 smurf2,LOC103360001 coding downstream 227593 29968648 ~ 29990288 (+)
G43895 NA non-coding upstream 286154 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 530131 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 554586 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 574359 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 581518 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 714617 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 993481 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 995754 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 1031326 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 1033127 30774182 ~ 30774548 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 65801 29640623 ~ 29667051 (+)
G43802 NA other upstream 628275 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1046714 28676542 ~ 28686138 (+)
G43682 NA other upstream 1244069 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1660053 28007514 ~ 28072799 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 144707 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 322325 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 342589 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 477855 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 598747 30339802 ~ 30344005 (+)

Expression


Co-expression Network