AMCG00013367 (cacng4,LOC107548710)


Basic Information

Item Value
gene id AMCG00013367
gene name cacng4,LOC107548710
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29697832 ~ 29710210 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013367
ATGGCGTGGTGTGACCGTGGGGTTCAAATGCTGCTGACCACGGTGGGGGCTTTTGCCGCGTTCAGTCTGATGACCATCGCCATCGGGACGGACTACTGGCTCTACTCGAGGGCGTACATCTGCAACGCCACCAACATCACCACGGACGAGTCACAGCCCAAGAAGGCGAGGGGCGACCTGACACACTCGGGGCTCTGGAGAATCTGTTGTATCGAAGGGATCAACAAAGGGAGCTGTTACCGGATCAATCACTTCCCCGAGGACAATGACTATGACACAGACAGCTCAGAGTATCTTTTACGTATTGTGCGAGCCTCCAGCATATTCCCCATCCTCAGCACCATCTTGCTGTTGCttggggggctgtgtgtgggTGCAGGACGGATATACAGTAACAAGAACAACATCCTCCTCAGCGCCGGCATCCTGTTTGTAGCAGCAGGTCTGAGCAACATCATCGGCATCATCGTGTACATCTCCAGCAACGCAGGCGACCCAAGCGACAAGAAGGACGAGGACAAGAAGAACCAGTACAACTACGGCTGGTCCTTCTACTTCGGGGCGCTGTCCTTCATCGTGGCCGAGGCCATCGGCGTGCTGGCGGTCAACATCTACATCGAGAAGAATAAGGAGATGAGGTTCAAGACCCGCCGGGAGTTCATTAAGactacctcctcctcctcgccctACTCCCGGATGCCCAGCTACCGCTACCGGAGGAGGCGATCACGCTCCAGCTCGCGGTCCACAGAGCCGTCCCCCTCCCGGGAGACCTCGCCCGTCGGGCTGAAGATGGTCGGCTCCGGCCCGCTGGGTGACATCTCCATGTACACGCTGACTCGGGATTCGCTCAAGAGCAACACGGCCTCCTATAGCCCGGAGCAGGAGTCCAGCTTTCTGCAAGTGCACAACTGCTTCCCCAAGGATGGGAAAGATGGCGTTAACAGGAGGACAACGCCTGTATGA

Function

symbol description
cacng4 Enables calcium channel regulator activity. Involved in regulation of AMPA receptor activity. Part of L-type voltage-gated calcium channel complex. Biomarker of acute myocardial infarction.

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-4 subunit-like

GO: NA

KEGG:

id description
K04869 CACNG4; voltage-dependent calcium channel gamma-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013367 True 966 mRNA 0.58 4 29697832 29710210

Neighbor

gene id symbol gene type direction distance location
AMCG00013365 LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241 coding upstream 70274 29586251 ~ 29627558 (+)
AMCG00013363 prkca,LOC107664393 coding upstream 124393 29568489 ~ 29573439 (+)
AMCG00013356 ern1,LOC106601756,LOC106606681 coding upstream 541247 29150242 ~ 29156585 (+)
AMCG00013352 znf207 coding upstream 576397 29115453 ~ 29121435 (+)
AMCG00013351 ube2o coding upstream 606225 29080000 ~ 29091607 (+)
AMCG00013368 NA coding downstream 11435 29721645 ~ 29724010 (+)
AMCG00013366 LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600 coding downstream 22642 29732852 ~ 29741055 (+)
AMCG00013371 pitpnc1,LOC106926703 coding downstream 144683 29854893 ~ 29860612 (+)
AMCG00013370 pitpnc1,LOC106564871,LOC108424775 coding downstream 150754 29860964 ~ 29869372 (+)
AMCG00013369 NA coding downstream 165964 29876174 ~ 29883122 (+)
G43895 NA non-coding upstream 251134 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 495111 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 519566 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 539339 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 546498 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 745462 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 1024326 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 1026599 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 1062171 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 1063972 30774182 ~ 30774548 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 30781 29640623 ~ 29667051 (+)
G43802 NA other upstream 593255 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1011694 28676542 ~ 28686138 (+)
G43682 NA other upstream 1209049 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1625033 28007514 ~ 28072799 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 175552 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 353170 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 373434 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 508700 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 629592 30339802 ~ 30344005 (+)

Expression


Co-expression Network