AMCG00013369


Basic Information

Item Value
gene id AMCG00013369
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29876174 ~ 29883122 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013369
tgtgtgtgtgtcccgcAGGTATCGGACCAGAAGCCGCTGGGCAGCTGGACGGTGAAGCAGGGACAGAGCGTTGCGTGTCCCGCGGTGTGTAACGGACAAACCGGGGAGTACGTCGTGGTCAGCGACCACAAGGTTCTTCGCGTATGGAAAGATGACGACATAAGTTTTGATAAAGTGTTTAAAGCAACaCTGAGCGCCGATGTGCAGCGGCTCCACGCGGTGCCGGACGCTGAGGCACTGGTGCTGTTCAAGCGGGGCGCAGTCCGGCAGCTGGACACCCTCCTCGCCGCCCCGCAGCAGCCCATCGAGGAGGTGCTGTCAGAGGACGAGGTCATCAGgtggAGCAGCAGCTTCGTGGACGGGGACCAGCCTGGGCTCCTGTTTGTCACGGAGCAGAATGGAGATCACTTCCTGTATCTGCAAAAGCTCCAGCCGAACGTCCTGCACAAGTATCGCATGGAGGCCGAGGGCAACGGTGCCAATCCCCTGAGCTTCGCTGCTCGACTGCAGGACAAGAACATCCGCGTcacgtgtctgtACTCCAGCGGCTGTGTGTTCGAGACGCTGCTGGCTCTGAGCCCTgtgctgggggagggggtgccGACCCTGCCCAGGTCTCTGCTGCTGCGGCTGCCTGTGGAGGAGGGGGTGGTGCCGGCCTCTGCCAGCCTGCTCTTCCTGGACGACGCCCACGTGGCCGTAGTGGGGGCGCCCCACCCGTCCGCCCATGCTGGGAAGGATTTCCTGTGTATCTGGAATCTCAATTtccagaccctgcaggcggcGAAGGAGCTGCCCGGGGGGGTGCATGGACAGCTATGGAGCCATGCGGCGCGGCTGTACGTGTCCCACGGGAAGGCCCTGACCGTGGTGCCCTACGAGTGCGAGGCGTCGTCCCTGGCGGCCGCTGTGGGGAAGCTGAGACCGGCCGGGCCGACAGGAGAAGTGCGGCCGTCCGCTTCCATCCCGTCCTGGAACGCGCTCCTGCACGAAGAGGTTCCCCCGAAAGCATGTAAAGGTGTGGAGACCCGGAAGAGCAAAATGTCCCGGAAGAGCCAAGCGCTGCCGGCCCTGACGGTGGACCAGGTGCTGGAGCGAATACAGAGCGTGTCGcaggaggagctgcagcaggACCTGGGGCTGTTCCTGTCCCGTGCCGGTGAGCCGGAGCTGCAGCTGTCCGTGGGTCAGATCACCACCGGGCTTGTCCGGCGCTGCCTGCAAGAGCCCACCTTCTACCCACAGAGCACCCTGGTGCAGCTGGTGCAGACTGGGCGCCTGTGTCACAGCGTGTGTCCTGATTTCCTGATGCTGGCGTTGAGCAAGAAAGACTACTTCCTCACCCAGCTGTGTCTGCAGCTCTTCCCCGACATCCCTGAGGCCGTCACCTGCGCCTGCCTGAAGGCCTTCCTCAGTGTCATGGATGCCGACCTGGAGGCCGTGTCTGTGGACCTGGGCAGCGTGTCTTTCATGACCGACCAGCCTCCACCCACGGGGCCGGGAGGGGGCGCAGCGGAGCTTCAGAACGGCTTCAGCCCCGCCCTACTGGATGAGGATAGCTGTGACGTCCAGACCCCCACGCTGGGACAGAGCCCGGTGGAGCCCGACCTGCCCTGCCCAGTAGGCCCGAAGAAGGCGGCATTACTAAATGAGATCCTGCAGACGGCGCACAGCGAGAACTTCCTCCTCCCGCCCCTGAAAGACCTGTCAGCCCAGCAAGTCATTCTGCTCCTTCAGTACCTGCAGTTCCTGTATGTTAGATGCTCTCAAGACGTCAACACGCAGCTGCCCGGGTTAAGAACGCCAACGATATCACAGATCCTGGACTGGGTGTGCTTGTTACTGGACGCCCATTTCACGGTCCTGATCCTGGTGCGACTCTTCTCTGAACTGGGCAAGATCCACAGCAGCCTGCAGGAGCTGCACCAGCTGCGCCAGTCCGAGGACATGGGCCTGTACGCCATCGAGGTCATCGAGCTGTTTTAGAGGCGCTGTGCAGACACTTCTTAATAAATCCCTCTGGTTTCTGTACCCCACACCAGCTCCCTGTGTGTGAACTTGTCCCACTCTGCCTAATAGTTAGGCCTTTTAGTACCTTTGCGTTCAGCATCCGGGGAGCCACAGAACCACGGCCCGGCAGGTCCATCGATTCAACCGTTcggtttgttttattctgtgctgGGTTTTCATACTGTTTCCTATAAAGTTTATAGGTTAAAAAAGAATGTACAGTGAAGCTGTGTTTAGATCCTGCAGACATTAATTATTGCAGAGTCCTGTCTGATGTCTATATGAAAAAGCATCCCTTAATACAGTTTAATACCTGAAAACATCCTTTGAAATAAAAaggtcattcatattttaaaaaatattattctggACAAATCAgcatttctttattcttttgtttgtttgtttttaagacgCCTTcattccttttgttttatttgttttttaagtgagTGGCTCAATTTGATGAAGTCTGGAGTCTATCTAatggtgtgttttgttttaagtgtttggAAGTCTGTATCtcaagttacattttattaaaccgttcttaattgtgttttgttagttgtgctgaAGTGTGCAGCTTCAGGTACTCTGTGCTTTATGGGGGTTGAACATACATGTGTTCATGTATAATGATTTAAAACCGAGGCAGCAGCAGCTGACGCCCCCGTAAAATCGTTTTCTATCGTTTCATTGTGACTTAAGAAATGACTTTCTTCTActtcaatttttgtttgtttttatccccGAAACAGTTGTTTGATGTGACAATCCCAAATATCTCATCCtgtcattaaaatgtgatgCTGTTTTGTAGAAAAGGAAACTGAAGACGCTCTTCCCGTTTTCTGactcaataaaaacattttaaagcga

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko05166 Human T-cell leukemia virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013369 True 2892 mRNA 0.55 17 29876174 29883122

Neighbor

gene id symbol gene type direction distance location
AMCG00013370 pitpnc1,LOC106564871,LOC108424775 coding upstream 6802 29860964 ~ 29869372 (+)
AMCG00013371 pitpnc1,LOC106926703 coding upstream 15562 29854893 ~ 29860612 (+)
AMCG00013366 LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600 coding upstream 135119 29732852 ~ 29741055 (+)
AMCG00013368 NA coding upstream 152164 29721645 ~ 29724010 (+)
AMCG00013367 cacng4,LOC107548710 coding upstream 165964 29697832 ~ 29710210 (+)
AMCG00013374 kpna2,LOC108432045,LOC108261381 coding downstream 56033 29939155 ~ 29944680 (+)
AMCG00013379 smurf2,LOC103360001 coding downstream 85526 29968648 ~ 29990288 (+)
AMCG00013383 LOC108432077,LOC105013158 coding downstream 120774 30003896 ~ 30010694 (+)
AMCG00013378 NA coding downstream 128346 30011468 ~ 30015464 (+)
AMCG00013381 LOC106564907 coding downstream 133101 30016223 ~ 30024254 (+)
G43895 NA non-coding upstream 429476 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 673453 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 697908 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 717681 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 724840 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 572550 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 851414 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 853687 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 889259 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 891060 30774182 ~ 30774548 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 209123 29640623 ~ 29667051 (+)
G43802 NA other upstream 771597 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1190036 28676542 ~ 28686138 (+)
G43682 NA other upstream 1387391 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1803375 28007514 ~ 28072799 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 2640 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 180258 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 200522 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 335788 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 456680 30339802 ~ 30344005 (+)

Expression


Co-expression Network