AMCG00013370 (pitpnc1,LOC106564871,LOC108424775)


Basic Information

Item Value
gene id AMCG00013370
gene name pitpnc1,LOC106564871,LOC108424775
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29860964 ~ 29869372 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013370
ATGAGGAGTAATGCCCTGAAGGGGGGTGCTAGGCTGCAGAGCGTTGTCCTGGCCTTTTGGTGTTCCTTCCTGCCGAAGTTCTCCATCCACATAGAGACGAAGTACGAGGACAACAAAGGCAGCAACGACCATATCTTCGACAGCGAGGCCAAGGACCTGGAACGGGAAGTGTGTTTCGTGGACATCGCCTACGACGAGGTCCCTGACAGATACTACAAGGAGTCAGAGGACCTCCGCTACTTCAAGTCCGAGAAGACGTCGCGCGGCCTGCTGCCTGAGGGCTGGAGGGACACCCAACAGCCCATCATGTGCTCCTACAAGCTGGTGACAGTGAAGTTCGAGGTGTGGGGCCTGCAGACGCGGGTGGAGCAGTTCGTCCACAAGGTGGTCCGAGACGTCCTGCTGCTGGGACACAGGCAGGCCTTTGCGTGGGTGGACGAGTGGATCGATATGACTTTGGATGACGTGCGGGATTACgagaaacaaatgcatgaaaaaacCAACATTAAAGTTTGCCATGAGCCGCAAGcgctttccacagattctcctTCACTGGATCACATAGAGTGCCATGACCGAGCAAGTGTATGTGACATTTTCCTTATTTCTATGTTACAATAATCTCCTggaccaccaccaccacccctgCCTTGTGTGTCGTCCTCACCAGACTGTCAattcaacacacacagaaacaagttAAAGACAGGtcacaacacacagaaacacgTAAACAGAGAAAGACAGGTCATGACCACTTTAAGATAAAGTGGTGTACACATAGAACAGATGATGTAATGCACGGGTCAGTGGGAGGGAGTTGGTCCACAGTGCCACGACCACTTCAGATTTCGGGTTCTAGGGATGTGGTCTCAGCCAGCATCGGCACAGTGAGGTGGGGAGGGCACAGGCACCCCTGAGGCACACTGGGGATGAGTAGACAAGCAAAGATTAGAAAATACATGTGCATGTGAAGACCTAATCAGAGATCTGAATGAATCTCtctcattctttgtttttttttccttcctccttCTCAACCTCCTGACCGCCCacccaaaaaaactaaacctgcGAAACCACAGACATGACGATGGACGAAGTGAGGGAGTTCGAGAGAGCGATACAGGAGGCCACCAACAAGAAGATCGGGATTTTCCCTCCCGCGATCTCCATCAGCGAGACCGCCCTGCCCTCCTCCACGCGCAGCGCCCCCAACAGCGCCCCCTCCACCCCGCTCTCCACCGAGGCCCCCGAGTTCCTCTCCGTGCCCAAAGACCGGCCCCGCAAGAAGTCCGCCCCGGAGACGCTGACCCTGCCCGACCCGGCGCAGAAGGAGACGCTGTTCCGTCTCCCGTGGTCCTACACCTTCCGCACGCATTCcaccccgcccccaccccccgagTAACCCTgtcccc

Function

symbol description
pitpnc1 Enables phospholipid binding activity and phospholipid transfer activity. Involved in phospholipid transport and signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: cytoplasmic phosphatidylinositol transfer protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013370 True 1418 mRNA 0.55 6 29860964 29869372

Neighbor

gene id symbol gene type direction distance location
AMCG00013371 pitpnc1,LOC106926703 coding upstream 352 29854893 ~ 29860612 (+)
AMCG00013366 LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600 coding upstream 119909 29732852 ~ 29741055 (+)
AMCG00013368 NA coding upstream 136954 29721645 ~ 29724010 (+)
AMCG00013367 cacng4,LOC107548710 coding upstream 150754 29697832 ~ 29710210 (+)
AMCG00013365 LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241 coding upstream 233406 29586251 ~ 29627558 (+)
AMCG00013369 NA coding downstream 6802 29876174 ~ 29883122 (+)
AMCG00013374 kpna2,LOC108432045,LOC108261381 coding downstream 69783 29939155 ~ 29944680 (+)
AMCG00013379 smurf2,LOC103360001 coding downstream 99276 29968648 ~ 29990288 (+)
AMCG00013383 LOC108432077,LOC105013158 coding downstream 134524 30003896 ~ 30010694 (+)
AMCG00013378 NA coding downstream 142096 30011468 ~ 30015464 (+)
G43895 NA non-coding upstream 414266 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 658243 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 682698 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 702471 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 709630 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 586300 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 865164 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 867437 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 903009 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 904810 30774182 ~ 30774548 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 193913 29640623 ~ 29667051 (+)
G43802 NA other upstream 756387 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1174826 28676542 ~ 28686138 (+)
G43682 NA other upstream 1372181 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1788165 28007514 ~ 28072799 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 16390 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 194008 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 214272 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 349538 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 470430 30339802 ~ 30344005 (+)

Expression


Co-expression Network