AMCG00013371 (pitpnc1,LOC106926703)


Basic Information

Item Value
gene id AMCG00013371
gene name pitpnc1,LOC106926703
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29854893 ~ 29860612 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013371
ATGGAAAGGGCAACCGTCCCGGTGCGGCTCCCGGCGAGGCCCTACCGGATCGGCCAGCTGTACATGATCAGCAAGCACAGCCACGAGCAGAGCGACCGTGGTGAGGGCGTGGAGGTGGTGCAGAATGAGCCCTACGAGGACCCCGCGCACGGGAAAGGGCAGTTCACGGAGAAGCGAGTATACCTCAACAGcaaGCTGCCCAGCTGGGCCCGGGCGGTGGTCCCGAAAATCTTCTATGTGACTGAAAAAGCATGGAACTATTACCCCTATACCATCACAGGCCTGCTGGACGTCCGGCACACGCTCTTGTGA

Function

symbol description
pitpnc1 Enables phospholipid binding activity and phospholipid transfer activity. Involved in phospholipid transport and signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: cytoplasmic phosphatidylinositol transfer protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013371 True 312 mRNA 0.61 4 29854893 29860612

Neighbor

gene id symbol gene type direction distance location
AMCG00013366 LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600 coding upstream 113838 29732852 ~ 29741055 (+)
AMCG00013368 NA coding upstream 130883 29721645 ~ 29724010 (+)
AMCG00013367 cacng4,LOC107548710 coding upstream 144683 29697832 ~ 29710210 (+)
AMCG00013365 LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241 coding upstream 227335 29586251 ~ 29627558 (+)
AMCG00013363 prkca,LOC107664393 coding upstream 281454 29568489 ~ 29573439 (+)
AMCG00013370 pitpnc1,LOC106564871,LOC108424775 coding downstream 352 29860964 ~ 29869372 (+)
AMCG00013369 NA coding downstream 15562 29876174 ~ 29883122 (+)
AMCG00013374 kpna2,LOC108432045,LOC108261381 coding downstream 78543 29939155 ~ 29944680 (+)
AMCG00013379 smurf2,LOC103360001 coding downstream 108036 29968648 ~ 29990288 (+)
AMCG00013383 LOC108432077,LOC105013158 coding downstream 143284 30003896 ~ 30010694 (+)
G43895 NA non-coding upstream 408195 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 652172 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 676627 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 696400 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 703559 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 595060 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 873924 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 876197 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 911769 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 913570 30774182 ~ 30774548 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 187842 29640623 ~ 29667051 (+)
G43802 NA other upstream 750316 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1168755 28676542 ~ 28686138 (+)
G43682 NA other upstream 1366110 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1782094 28007514 ~ 28072799 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 25150 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 202768 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 223032 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 358298 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 479190 30339802 ~ 30344005 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000351_01437836_01477923 PITPNC1 coding CI01000351 null 1437836 ~ 1477923 (-)