AMCG00013372 (psmd12)


Basic Information

Item Value
gene id AMCG00013372
gene name psmd12
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29796583 ~ 29803243 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013372
TGCGTGGGTCCTTCGCTACGTTTAGGCGGCCTCCGCAGCTGCCTTCCCATTGGTCGCGCCTGTCAGCTTCCGGTTGGCGACACACAGCAGTCGGAAGTGGCAGCCAGCGCACGGTGGGAAGCGCACAGAGCGGTTGGATTTACCTGCAGGTTTACCGGTTTGTTATTGTCCGAGATCCCCTTGCAACGCTGCGAAAATGGCCGAATCGTCGGAGAGAGCGGACGGGAAGATCGTGAAGATGGAGGTGGACTACAGCTCGGCCGTGGAGCAGCGCGTCCCGGAGTGCGAGAAGATGGCCAAAGCATCGGACATGGTGTCCACCTCCCGCATCCTGGTGGCCATTGTGCAGATGTGCTACGAGGCCAAGGACTGGGACACCCTGAATGAGAACATCATGCTGCTGTCCAAGAGGAGGAGCCAGCTGAAACAGGCTGTTGCCAAGATGGTGCAGGAGTGCTACAATTACGTGGACACGCGCGCCCGGCTGACCAAGACCCTGGCCAACATAAAGGAGCAGAGTGGAGAAGTGAAGGAGGCTGCGGCGATCCTGCAGGAGCTACAGGTTGAGACGTACGGCTCGatggagaagaaggagaaggttGAGTTCATCCTGGAGCAGATGAGGCTGTGCATCGCAGTCAAAGACTACATCCGCACGCAGATCATAAGCAAGAAGATCAACACCAAGTTCTTCCAGGAGGAAGGGTCAGAGGATCTGAAGTTGAAATACTACAATCTAATGATCCAGGTTGATCTACACGAGGGGTCCTATCTCTCCATCTGCAAACACTACCGTGCCATTTATGACACCCCCTGCATCCTGGAGGACAGTGCCAAGTGGCAGCAGGCTTTAAAGAGTGTGGTTCTGTATGTAATCCTGGCCCCCTATGACAACGAGCAGTCCGACTTAGTTCACAGAATCAACACTGATAAGAAACTGGAGGACATTCCCAAATACAAGGATCTGCTGAAGCAGTTCACCACGATGGAGCTGATGCGCTGGGCGGCCCTGGTGGAGGATTATGGGAAGGAGTTGAGAGAGGGGTCTCCCGACAGCCCGGCCACAGACGTGTTCGCGTACACGGAGGAGGGCGAGAAGAGATGGAAGGACCTGAAGAACAGAGTCGTGGAGCAtAACATACGGATCATGGCCAAGTACTACACACGCATCACCATGAAGCGCATGGCTGGACTTCTGGACCTGTCTATCGATGAGTCGGAGGAATTCCTCTCCAGCCTGGTCGTCAGCAAGACCATCTACGCCAAAGTGGACCGGATGGCCGGCGTCATCAACTTCCAGCGGCCAAAGGACCCCAACGACATCCTGAACGACTGGTCGCACAAACTGAACTCGCTCATGTCCCTGGTGAACAAAACCACACACCTGATCGCCAAGGAGGAGATGATTCACAAccttcaataaaacataataaaacgaATCCCTCGATCCGAGTTTGATTAAAGGACAATGTGTTTCGGAGTGTCGTCCGGGTGGGAGAGGCGACGCTGGCCTTGCGCAGGTCATTCCAGCTTAAAGTTGCGTTGCGTGGATGAGACCGGCGCCCGGTCCTTGTTTCCTTAGCGGTTATTGTAAACCTGTTGTAGTTTTCCATATTTCTAATTTtttaatcgtttttttttttttaagaagatgCAGGAAGAATAAGTCTGATCTATTTTCTCCCCAAAACCCGATCCAGCCTGTATCTTAAAGGTTCCCCTGAGACCTGGCAGCATTTGGACTGTGTTGGTTAACTGTCCCGTCATTATTTTGTACCTCATGCATGTATGCTAGCGTGGCTGTCGCCCACAGATGGGGCGTACGTGTCTTTTGTGTTCTCACAGGTTTGACATGTAACCGTCATGATAAGGGATGTAGTTACGTGTGACACAAGCAATATGTGCTGTATTAAAAGACTGCTTGTAACTCTGGGTGACTTTGTTTTTTGGGGTCTAACGAATATTTCTGcgttattaataatactaataaacatTCACACTTTCGTAAAACCAAGGAGGGTTTTAACATTTGTCCAGGCCTGGCCTTTTCTGGATTACGATCTGTTggtttgctgtgtgtttgggttttttCTG

Function

symbol description
psmd12 Acts upstream of or within brain development; cranial skeletal system development; and kidney development. Predicted to be part of nuclear proteasome complex and proteasome regulatory particle, lid subcomplex. Predicted to be active in cytoplasm. Orthologous to human PSMD12 (proteasome 26S subunit, non-ATPase 12).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 12

GO: NA

KEGG:

id description
K03035 PSMD12, RPN5; 26S proteasome regulatory subunit N5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013372 True 2094 mRNA 0.51 10 29796583 29803243

Neighbor

gene id symbol gene type direction distance location
AMCG00013373 LOC106564877 coding downstream 2457 29746227 ~ 29794126 (-)
AMCG00013361 NA coding downstream 347102 29445941 ~ 29449481 (-)
AMCG00013362 NA coding downstream 350711 29444447 ~ 29445872 (-)
AMCG00013360 LOC106606716,LOC106601764 coding downstream 356113 29439999 ~ 29440470 (-)
AMCG00013359 NA coding downstream 492557 29282664 ~ 29304026 (-)
AMCG00013376 LOC107081327 coding upstream 128407 29931650 ~ 29935170 (-)
AMCG00013385 NA coding upstream 188057 29991300 ~ 30002882 (-)
AMCG00013389 rhbdl3 coding upstream 288619 30091862 ~ 30100704 (-)
AMCG00013391 NA coding upstream 314557 30117800 ~ 30126501 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding upstream 323454 30126697 ~ 30153358 (-)
G43919 NA non-coding downstream 297010 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 675264 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 678622 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1057810 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 1078643 28716291 ~ 28717940 (-)
G44086 NA non-coding upstream 285560 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 503783 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 581443 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 730728 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 737070 30540313 ~ 30562691 (-)
G43869 NA other downstream 542267 29253396 ~ 29254316 (-)
G43684 NA other downstream 1328677 28467312 ~ 28467906 (-)
G43594 NA other downstream 1723796 28068213 ~ 28072787 (-)
G43473 NA other downstream 2227432 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 2503510 27273229 ~ 27293073 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 123140 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 236962 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 277371 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 362574 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 483399 30286642 ~ 30290867 (-)

Expression


Co-expression Network