AMCG00013374 (kpna2,LOC108432045,LOC108261381)


Basic Information

Item Value
gene id AMCG00013374
gene name kpna2,LOC108432045,LOC108261381
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29939155 ~ 29944680 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013374
CGAGGAACTAGTAAGTGCTCTCCACTCAGCTGGGCTTTATTTCGTTAAAATAAGAGGtttcttttgtcatttttgaacgtttgtgtatattattgtgagtattaaagcagtgttttttgtaAGTACATCACCTGTGTCTCTAATTGGAGAActgcattaatatttaatggtgATGATGTAATCTACGGTAAGCCGGGCGTCTCTCGCTTTCTTTGGGCCGAATGAACAGCGCCAGTGCTCCTGAGCGAcgtgtttatttgttcttatgTCCCCGTTTCTCAGGATCTGTTGGATTCCCGGCGGTATCGGCTCGTCTGCTCTATACGTGTGAAACATGTCCGCCGCTGCCAACGAGAACATGGTCCGCCTGAACAAGTTCAAGAACAAGGGCAAGGACGCCAACGAGCTGCGCCGGCGCCGCATCGAGGTGAACGTGGAGCTGCGGAAGGCGAAGAAGGACGAGCAGATCCTCAAGCGGCGCAACGTCAGCAGCTTCCCGGACGACGCCACCTCGCCGCTGCAGGAGAAGAACCAGAACCGCCAGGGCGCCCCACACTGGTCGGTGGAGGAGATTGTGAATGGAGTCAATGCCAACAACCTGGACCTCCAGCTGCAGGCCACCCAGGCAGCAAGGAAGCTGCTTTCCCGCGAGAGGCACCCGCCCATCGACAGCATCATCAGCGCCGGGCTGATCGAGAAGTTTGTGGGCTTCCTGGGCGTGTCGGAGTGCCCCCCCATCCAGTTCGAGGCGGCCTGGGCACTGACCAACATCGCGTCCGGCACCTCGGACCAGACTCGTGCCGTGGTGGAGGGGGGCGCCATCCCTGCCTTTATCAGCCTGGTCCCCTCCCCGCACCCCCACATCAGCGAGCAGGCGGTCTGGGCCCTGGGCAACATCGCTGGGGATGGGTCCTCCTACAGAGACAAGGTCATCAAGCACGGTGCCATCGAGCCCCTGCTCGCGCTGCTGGCCGTGCCTGAGCTGTCTGTGTTCTCTTCTGGCTACCTGCGCAACCTTACCTGGACGCTGTCCAACCTGTGCCGCAACAAGAACCCGGCGCCTCCGCTGGCAGCCGTGCAGCAGGTGCTGCCCACACTGGTGCGGCTGCTGCACCACGACGACCGCGAGGTTCTGGCCGACACCTGCTGGGCCGTGTCGTACCTGACGGATGGGCCCAACGACCGCATCCAGGTGGTGATGCAGACCGGCCTGATCCCGCGGCTGGTGCAGCTGCTCGGGTCCGGAGAGCTCAGCATCGTGACTCCGTCGCTGAGGTCAATCGGCAACATCGTGACCGGCACGGACGAGCAGACGCAGGCGGTGCTGGACGCCGGGGCCCTGGCCATGTTCCCACCGCTGCTGCGGCACCACAAGAACAACATCCAGAAGGAGGCGGCCTGGACACTGTCCAACGTCACGGCTGGGAGGGGCAGCCAGATCCAGGAGGTCATCAACGCCGGGCTCATCCCACACCTGGTGGAGGTGCTGCGACGGGGTGACTACAAGACTCAGAAGGAGGCTGTGTGGGCAATAACCAACTACACCAGTGGGGGCTCTGTGGAGCAGGTGGTGTATCTGGTTCAGGAGGGCATCCTGGAACCGCTGCTCAACCTCCTCTCTACTAAGGACAGCAAGACCATCCTGGTTATCCTGGATGCCATCTCCAACATCTTCCTGGCCGGTGAGAAGCTGGGTGAGACGGAGAAGCTGTGCCTGATGATCGAAGAGTGTGGCGGCCTGGACCGGATCGAGGCCCTGCAGTCCCATGAGAACGAGATGGTCTACAAGGCCTCGCTCAACCTGATCGAGAAGTACTTCTCTGGGGAGgaggaggaggaccaGTGTGTCGTCCCAGAGGCCACAGAAGAGGGCTTTGCCTTCCAGGTCCAAGACTCCCAAAGCACTTTCAACTTCTAGACACTTTCTCCTGTTACAATGCGTACTTTATCAATGTTGGTTTGTCCAGAGTTCTGTCTTTCACCACAATGTACATAAGTGACTGTGaccttttattcatttttatatgacTGTAATATGGTGTAAATAAACTTTAATAGCAACCTTAAGTGTGAAGCCCATTCCTCCACAGACTTCACTCCTACTCCTTTCTCTTTCATGTCACCTTCTGAACTTCCATCTGCTCTGAGG

Function

symbol description
kpna2 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Is expressed in proliferative region. Orthologous to human KPNA2 (karyopherin subunit alpha 2).

NR:

description
PREDICTED: importin subunit alpha-1-like

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K15043 KPNA2_7; importin subunit alpha-1/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013374 True 2149 mRNA 0.57 10 29939155 29944680

Neighbor

gene id symbol gene type direction distance location
AMCG00013369 NA coding upstream 56033 29876174 ~ 29883122 (+)
AMCG00013370 pitpnc1,LOC106564871,LOC108424775 coding upstream 69783 29860964 ~ 29869372 (+)
AMCG00013371 pitpnc1,LOC106926703 coding upstream 78543 29854893 ~ 29860612 (+)
AMCG00013366 LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600 coding upstream 198100 29732852 ~ 29741055 (+)
AMCG00013368 NA coding upstream 215145 29721645 ~ 29724010 (+)
AMCG00013379 smurf2,LOC103360001 coding downstream 23968 29968648 ~ 29990288 (+)
AMCG00013383 LOC108432077,LOC105013158 coding downstream 59216 30003896 ~ 30010694 (+)
AMCG00013378 NA coding downstream 66788 30011468 ~ 30015464 (+)
AMCG00013381 LOC106564907 coding downstream 71543 30016223 ~ 30024254 (+)
AMCG00013380 NA coding downstream 88731 30033411 ~ 30045500 (+)
G43895 NA non-coding upstream 492457 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 736434 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 760889 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 780662 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 787821 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 510992 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 789856 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 792129 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 827701 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 829502 30774182 ~ 30774548 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 10458 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 272104 29640623 ~ 29667051 (+)
G43802 NA other upstream 834578 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1253017 28676542 ~ 28686138 (+)
G43682 NA other upstream 1450372 28484273 ~ 28488783 (+)
AMCG00013382 NA other downstream 118700 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 138964 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 274230 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 395122 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 480327 30425007 ~ 30430649 (+)

Expression


Co-expression Network