AMCG00013376 (LOC107081327)


Basic Information

Item Value
gene id AMCG00013376
gene name LOC107081327
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29931650 ~ 29935170 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013376
ATGGAGATTAGATAGCTGTTCTCCCTGATGGGGGCCCCGCCTCCAAAGGGGGGCGCGAGCGACGTGCCAGAGCTCCCCCACAACAACCAAAGCAGAGCGGTCGCCAGGGATCCGCCCCCCCCGGCCAACGACCTCCTCGAGGCGGCTGGCAAGCAGGTGGAGTCCAAGTATGCCCAGCAGCTGCTGCCCCCCGAGCCATGGCACAAACACGCAGGGCTGGCCCCCCCCCTGCCACGGCCCGGCAACAAGGGCAAGAAACCGGGCAAGATGGAGCGGCTGCCCAGTGAGCACAACAGCGAGAAGAGCCGGGGCGGCGAGGGCCACACGCAGGCACCTGACAGCCTCGCCAAGCCCGCCCTGGCACCCGCTACCAACCGCACGCAGAGGCCGGCGCAACCCGAATCGGCCTCACCCAACACGGCCGCCTCCTCAGAGCCGGACACCCGCCCCCATGCCAACCCCAGCCCCAATGCCCACAACCCCAGTGCCCGCGCCCGGGGGCACTCTCCCCCCTCGCCCACGAAGAGAGACCCGCCCCCCGCCGGAAGGAGGATGGACCCCGAGGAGAACCGGCCAGGGAAGACAGGCGCCACGCAGCTGGGTGGCGGCCACAGGAATGGCAGCAGGGCCTCCATTACCTCCAACCGCCGCTCCTCCAGCCTGCTGTACCAGTACGACATCCTGAAGAGAGAATCAGAGTACAGTCAGGAGGCCGTCTGCCTGAGCGAGTGCCgcaaggagaaggaggagagagagcacTTCTGCTACAGTGAATTCGCGATCAACGGCATCGTGCACGACATCGAGAGCCTGCGCCGGGGGATCCGCCTCGTCACGCTGCTGGTGAACAGTGACGGCTTTTACCGCATGAGCCGCCTCTACGTCACCCCCGACGGGTTCTTCTTCAAGGTCCGCCTGCTGGTGCTGGACACCTACAAGTGTGCCAAGCCCTGCCCAGACCTCAAGCTCGGGAGCCGGTACATTGTAATGGGCCAGATCTACCACAGGAGGCGCCACCTGTCCAGCGAGCTCCTGGCCCTGCTGGCGGGACGCCTGAAGCCGGGAGACGGACTCATCCGCAGCAACAGCTACGTCAAGAGGTTCAACAAGAGGCGGGACGGAAAGGTGCAGGAGGCGGTGCGCACCAGGTGCCGGTGAGAGGGCCCTGCTGCACCGGCAGAGACACGGCGCCCTGCGGCACGGATCCGTATCTACCAACTAGTCAgactaaaaacacaaacagagctgCCCTGTCTCTGAATATGGGGGGCAGCACCATCAGCCACGGACCCCGCCGGCGTTCTCTGTCCACGCTCTGTCTTTGTTGGGAGGGTTGTTTCTGCTTCGTTAGCTTTTAAAAATCGACCAGGGCCTGCAGCCATAGGGAACAGCAGCGCCGTTCAGAACACAGGAAGCGACACCGGCTCGTCTGTTTATATGCACAACCGGAACAAAAACGTAcaagatgttatttatttttatttttttcaaacagaaaaaggTACGATATGAATTTAGAAACCCGATGCTGGAGCATCCCCCCTCCCCTCGTTTCCAGGCTGTCCCACAGCTCTGCAGGTCGCTCTGTTCATTGTATCGTTGTCCTTCGCTGTATatattgccatttatttttatatccagtTTGTAGGGCCTGTTGTGTGGATTTACAGAAGGGTGTCTGTATTGATGGAAACTTGCAGGAAGCGCTGGGAGTCACTGTTGACTTTGTGACAAGCAGGGGGGAGAACAGACAGTCCTTTCTCATGTACGCGAGTGTAAATACTGCACTgcctgccctccctccctccttttattttctcttatcaGTATTCAGGAAATGCACTGTTatgtttaaaaagagaaaacagcATTTACCAAAACGTAACGTTCCCCAGCAGAGGTTATTTCCTGCGGCTCTAATGATGTGCGTGCGCCGAGATGTTTCCCCAGGCGGCGGCTTCAAAGCGAGTGGGGCGGAGGGAGGGTGTTTGTGGAAGGGTGACTGTAAATCAGGCCTCGGGAACCCAATCCGCCGCGCACCTGGACCGCTGGCACCGGCACTCGGCGCGGCCCTCGGAGGCGGCAGGAGAGGCCCTCCCGGCCGCACCCCTCCTGGCCTGTTTGCTTAAGTACAGTGACTCCCCAGAGAGCAGGACTCAAAGGAAGCATTAGAGAGGAGGGTGGGGGAAGTAAAGAGGGAAAAATGGATCGTGAAAGGAAGCGGGGCAGAGAAATCCCTCGAGGGCGTGGggtttttttctgtgttgttgttccTGTTGTCGGttcttctccctcccctctcgAGGAGAAGTCTTTAAAGCGCACATGCATGGTCTCTGGCCCCCAGACTCACTCCCCTGGGCGGAGGGCTGGGTGAACGCGGGGGCACTGTGTACAGGCTGAGTCTAAGTAAggaatttattaaaacatgttttttacaggtttttttccctca

Function

NR:

description
PREDICTED: UPF0450 protein C17orf58 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013376 True 2455 mRNA 0.59 5 29931650 29935170

Neighbor

gene id symbol gene type direction distance location
AMCG00013372 psmd12 coding downstream 128407 29796583 ~ 29803243 (-)
AMCG00013373 LOC106564877 coding downstream 137524 29746227 ~ 29794126 (-)
AMCG00013361 NA coding downstream 482169 29445941 ~ 29449481 (-)
AMCG00013362 NA coding downstream 485778 29444447 ~ 29445872 (-)
AMCG00013360 LOC106606716,LOC106601764 coding downstream 491180 29439999 ~ 29440470 (-)
AMCG00013385 NA coding upstream 56130 29991300 ~ 30002882 (-)
AMCG00013389 rhbdl3 coding upstream 156692 30091862 ~ 30100704 (-)
AMCG00013391 NA coding upstream 182630 30117800 ~ 30126501 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding upstream 191527 30126697 ~ 30153358 (-)
AMCG00013392 NA coding upstream 220092 30155262 ~ 30164478 (-)
G43919 NA non-coding downstream 432077 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 810331 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 813689 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1192877 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 1213710 28716291 ~ 28717940 (-)
G44086 NA non-coding upstream 153633 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 371856 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 449516 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 598801 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 605143 30540313 ~ 30562691 (-)
G43869 NA other downstream 677334 29253396 ~ 29254316 (-)
G43684 NA other downstream 1463744 28467312 ~ 28467906 (-)
G43594 NA other downstream 1858863 28068213 ~ 28072787 (-)
G43473 NA other downstream 2362499 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 2638577 27273229 ~ 27293073 (-)
AMCG00013384 NA other upstream 105035 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 145444 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 230647 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 351472 30286642 ~ 30290867 (-)
G44243 NA other upstream 464717 30399887 ~ 30423025 (-)

Expression


Co-expression Network