AMCG00013377


Basic Information

Item Value
gene id AMCG00013377
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30046238 ~ 30061553 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013377
gttcaATATTCACTGGCCAGGATTACACTGCAAGAAACCCTGGTACCTGATTTATACAGTGAACTGAACTGAGACTAGTTTATGCACAACCAACAAAtcagtgtaaaaatatattttaattcagctGTTCTTCAGGGGAGACGCACgcacagacactcacagacacagctgcaggtaaaacacacacaggtaaaTGTTTGTGTAAAGGTCCACACTGCCTCAATTCTGGAAACAATAATTCCTGACTTTAAAGCCCCCTGTATTGAAACTGCACCTTGGAGTTGCATgtgtacacacaacacacacactcactcactctcacacacatacatctcaGGGCTGGGGCTGCTGCTCTGTGTCAGGGCTGGGCTTCCCCTGgccccctgctctctctctctccaggaagTAGCTCCTCTGCTCAGCGATGGCCCTCTGCAGCATGGCCATGTTGGCCCCGTCCACACAGCTCAGGATCCGCGCTCGCACCGCCACAGCGCCCCCTTCCCTGCTCTCCAGCTCTCCCAGGACTAAATACTGGGCTCCAGTGAGGGCAGCGAAGGGCTCCACGAAGCCAGTGTGGATGGTGAGCTGGTGCTGGGTGGGTCCGTGCTGGGTGGCGAGGACTGCCTCAGACAGCTCTGCACTGTAGCTCTGCAGCCTGCCAAAGGTCCTCACTGTTGCCCCCTCCTGGACCTCCCCAGATCTGATCTCCCAGGGGAAGTGGAAGACTCCAGGTGCCGGCAACATCTGCACGGAATAAAGATGGTGCcttgAATTAATTTAAGCCATGTGTACGTGCAATAAAACACACTGAGGGGTTGAGATCATGTTTCCCTGCACCGTGCACACCACCATGCTTCCCCTGCTGTTCGGTAGCTGCTGTAACTTCCGTGAGGAGAAGCGCAACCCGCCTTTACTGTTCACTCCCAGATCAGCTGACCAAACCCCTGGTCATGTGACGGGAGAGTCAAGGTACAGTGTCGCCCCATGAGTGGATGAGAAAGTGAATGCAGATACATAATAAACAGCACAAGTGTCGTTTGTTATTGGACTGCCTCTCTCCAGGGCTTTCCGGTCGCTCTGCTCCTGAAGGCCTAGCGAAGCCACGCATTGGATTGGCCAGCAGCCCCGCCCCTGGCTTCCTTGTAGGCTGACGTGACGCGGAGCCAAAGCCGAGGCTCCTCCCCTTTCCCCCGGCCTGCGCCGGCTGTCATCGGTGTTTGCGATTATTGTTGCGCACACAGTCCGCGCTGTTGTCTCCCCTGCAACCTCCTCGGGCATACACTCATCTGAGCTACtgaacaacaataaaagtaatCCGCCATGAACCCCGACCTCCGAAAAGAACGGGACAACGCCTCCTTCAAGACCGAGGTCCTGACACACATCCTCGATGGGGGGCCGGAGAAGACGCATCGGCGGAGAGAGATCGAGTCGCTGGTCATCAACGACCCTGACTTCCACCACGAGGACCTGAACTTCCTGTCGCGCAGCGAGCGCTACGACGCGGCGGTGAAGAAGAGCGCGCTGATGATCGTGAAGCTCAGAGAGTATGGCATCTCCGACCCCGAGGAGATCTACTGCTACAAGAGCATTGCAAAAAGTCATTTCAACGAGGCTCTGGGCCTGCACTACGTCATGTTCCTACCCACCTTGAGGAACCTGGCCACCCCGGCCCAGCAAGAGAAGTGGCTGCCGCTGTCGTTCTGTGTGCACCGCGGGCGCCCCGAGCCCCTGGACCTGCACCTGGGGATGTTCCTGCCCACGCTGCTCAACCAGGCCACCCCCGAACAGCAAGACATGTTCTTCCTTCCCGCATGGAACCTGGAGATCATCGGCACCTACGCCCAGACCGAGATGGGCCATGGGACTCACATTCGCGCTCTGGAGACAACGGCGACCTATGACCCCTCCACACAGGAGTTTGTGCTCAACAGTCCTACGATCAGCTCTATCAAATGGTGGCCTGGAGGATtggGTAAGACCTCCAACCATGCGGTGGTACTGGCGCAGCTGTACACCCAGGGGCACTGCCACGGCCTCCATGCCTTCATCGTGCCAATCCGGAGCATGAGCACCCACGAGCCGCTGCCAGGGGTGGTTGTGGGGGATATCGGCCCCAAGTTCGGCTTCGACGAGGTGGACAACGGCTTCCTGAAGCTGGAGAACGTGCGCATCCCCCGGGACTACATGCTGATGAAGTACTCCAAGTCCTGCACCATCGCAATCCGCTACAGCGCTGTGCGGCACCAGTCCGAGCTGCGACCCGGGGAGCCCGAGCCGCAGATCCTGGACTATCAGACCCAGCAGTACAAGCTGTTTCCCCTGCTGGCCACCGCCTACGCCTTCCACTTCGTGGGTCAGTACATGAGCCAGACCTACCACCGCATCACAGGGGACATCAACCAGGGCGACTTCAGCCAGCTGCCCGAGctgCACGCTCTCTCGGCCGGGCTGAAGGCGTTCACCACGTGGGCGGCAAGCTCGGGCATCGAGGTGTGCCGCATGGCGTGCGGGGGTCACGGGTACTCGCGCTGCAGCAGCCTGCCCGACATCTACGTCACCTTCACCCCCACCTGCACCTATGAGGGCGAGAACACGGTGATGATGCTGCAGACCGCCAGGTACCTGGTGAAGAGCTACACACAGGCGTGCGAGGGGCAGCAGGTGGGGGGCATGGTGTCGTATCTGAGCGAGACGCCCCATCACCGCCTACAGCCGCAGCCGCTGTCCTCCCGGCCCACCGTCGTCGACATTAGCGACCTGGCCAGCCTGGTGGAGGCCTACAAACTGCGGGCAGCCAAGCTGGTGGAGCTGGCGGCCAGGAGCGTCCAGGGGGAGCTTCAGCGCAGGAAGAGCAAGGAGGAAGCCTGGAACAGCGCCTCCATCGACCTGGTCCGAGCCTCCGACgcGCACTGTCACTACGTGGTGGTGAAGCTGTTCTGTGCGAAGCTGGGGGAGGTGGGTGACACGGCGGTGCACTCGGCGCTGTCCTCTCTCGCCCTGCTCTACGCTCTGCATGGCATCGCCCAGCACTCCGGGGACTTCTTGCAGGCCGGGCTCCTGAGCGGGCCCCAGGTGACCCAGGTGTCCCAGCGGCTGAAGGAGCTGCTGGCCCAGCTGCGGCCCAACGCTGTGGCGCTGGTGGACGCCTTCGACTACCGCGACGAGATGCTGAACTCGGTGCTCGGCCGTTACGACGGCAATGTCTACGAGAACATGTTTGATTGGGCCAAGAAATCACCGCTCAACCGCACCCAGGTGCACGAGTCCTACCACAAGTACCTGAAGCCCCTGCAGGCCAAGCTGTGAGGCAGGAAGCCATGCTGCTGACCCTCCCCGGCGCACCTGTCAGTCAGAGCTATCGCCCTAGAATCCTAGCAATGTATCTAATCGATTAATGGAACGGAACTGGAACACTACAGTGTTCGGAACAAGAAGTGCAGCCTTGATTGGCCAATCACAATCCTACTTttccatagttttttttttttgtatgtttgattgttttttttttcctactaaAACTCCCAGAAGCCCCCTGCTGCTGTGTGCTACAAATGGCACCAaggtagaggtcttcacgggtccacccGTACGGGTTcgggtccatattttaaacggtcagccgggtccgggtcgggtcccattcttgtacttcgggtcccgggtctgtttaacattgtgtatAATACCCGAGTGATGCAGtgactttaccaattgacgattggctcttttatttataaggcgggacttattccgccatatcggtgtttgacagatgatGTAAACCGAAGTGCATTATGGGCGTCGGCGCGATTTTTGAGATATCGTGGTTGGAGTTTGTTCGCTTTGTATCTAAATCTATGGCAGACGCGTCTCAGAGCACAATGACAGCAGATTAGTAATGCTAATGTCAGCGGCCTGGCACTGAATGAGCAATcattattatagttcaaaagggcaaacagtggaagttatcatattatgcgagatacaaaaaactgcaaagctgcaaagtcgTGTTCGTCCTCTGCCACCGTGACAGCGAGTGGActtttgaactgaaataatgagtggattatacaggcgctttcaatcagcaagaggagcttcatggatgttattttaccaacttTCCTGGCAAGGAGGACGGACTATATGCGTCACGgtcaggtacaggagagaagctactaacgttacattaggtaagacacaaagttttattttcacagcttgtaaattaacttgttaatagcgATTAGCTGTGGGGTCTGTGCCGATCAGGTTCAatcaggtctgtgtgtcccggctgggtccgggtccagatttcaaatttcaaataacaGACGGGTCCGGGTCAGTTCCGAATAGCACATTTCCGGGTCTCTTCGAGTTCGGGCACATATTTTTGGACCTGTGAAGACCTCTACACCAAGGTACAAATgctgtgacaaaaaaaaaaaattcttccTTCTGTATTTGACCCGCTGCACACTGCCTACATTTCCTAAGACCTACTTGtccttctttgtgttgttttcattcagtcatctacattttgtttttcttcctgatCCCTTCATTCCAAGAGTATGCTTGACCTGAAGAACAACATAGACAGGGAGGCGAAAGAGAGACATGGAGTAAAACGatttttggggagggggggatgttTTCGAAGTGTGCAAAGCTGTGATTCCTCTTTCACATTGGTTTGAAACACtatgggctggtttcacaggccCAGATTAGCGCAGATTTTAGGCAAGACCAGTGCCTGTCTAGGCCTGGAGGAGCCGCTGGGAGGGTTATTACTGTATCTTGTCCGATTTTGTATGGCTCTCTAGTTTTAATCTTAGAAAAAGTAGTGCAGTAgttcttttggttattttattgtagtAGTCAGACCCCCTTTAAACAGTTTTTGATGCAGGGAATGGCATTAGTGAAACAGTAGGCAGTCCAGAGCTCAGAGGGGAAGATGGTAGTTAGATAATTGGCTGGCTCGTAAGCCCCTGTGTGGCCAGGGAGGAGAGCAAGGTGGCTGCATGTTCATGCCAGATTCAGTCGTGCCAAATGCCGTGTTTTAAGATGGACAGATTGATATGGGGAATGCTGgattacaacagcagtgttgCATAGACGAGTTCTGACCCTTTCTGTCCAAGCTGGGCTTGCCGTACTGCTCAGAGTATGACTCGGGCTCCCAGGCATGCAAGTCTGACATGCCTGGAACAGCAAAAGCAGTAAAAAGGtgaaatgaataatattttttaaatgtgtttccttTTCTGTAAGTATGCAGGACTATAGTGCTGCTTGTTTTGTATTGGTATggtaataatattttaattttaattacccTGCTGGAAGTGTGTTCAATGAGCCATCTGCATGACAATGTCAGAGCTCAGATAGCAACGCAGTCCCTAAAGGAGTACGGCAAGCCCACCTGGACAAAAGCAGCGAGGAGACTTGTGTGTAGAAGACTCTTCTGTAACTCCGTTTTACCTGTCACCTTAAACATGACTGAAACTTACACGTAAAAAATGATGGAAACACTCAGCTGGATACTGACCTTTGATACTGATCTCAAGTTGACGCTGATCGATTGATTCTGAAATCCATTTCTTTTCcaggaaagactgttttaattcattacttgaattagtattttgtttttgaaatccaGTAGTCGTTCGTTAGTATCAAAAGGTTTAATTAACAacgttttattgttttacttctaTGAACTTACTGCAAATCATCTGTCACACatccttgtttttttgcagCCTTTCTTAGTATgtgatataaattaaaacaatcatgtGTAAACACTGTGGTGGTTCACAAATGTGatcttaattacttttaataacaagaaaatattcTTGGGGgcatgttttatattgtgttaaG

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005777 peroxisome cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0003997 acyl-CoA oxidase activity molecular_function

KEGG:

id description
K00232 E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013377 True 5925 mRNA 0.52 18 30046238 30061553

Neighbor

gene id symbol gene type direction distance location
AMCG00013380 NA coding upstream 738 30033411 ~ 30045500 (+)
AMCG00013381 LOC106564907 coding upstream 21984 30016223 ~ 30024254 (+)
AMCG00013378 NA coding upstream 30774 30011468 ~ 30015464 (+)
AMCG00013383 LOC108432077,LOC105013158 coding upstream 35544 30003896 ~ 30010694 (+)
AMCG00013379 smurf2,LOC103360001 coding upstream 55950 29968648 ~ 29990288 (+)
AMCG00013387 NA coding downstream 103501 30165054 ~ 30167818 (+)
AMCG00013397 NA coding downstream 125287 30186840 ~ 30194163 (+)
AMCG00013398 NA coding downstream 146520 30208073 ~ 30217024 (+)
AMCG00013394 NA coding downstream 194730 30256283 ~ 30263941 (+)
AMCG00013395 NA coding downstream 217638 30279191 ~ 30283556 (+)
G43895 NA non-coding upstream 599540 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 843517 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 867972 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 887745 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 894904 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 394119 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 672983 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 675256 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 710828 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 712629 30774182 ~ 30774548 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 117541 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 379187 29640623 ~ 29667051 (+)
G43802 NA other upstream 941661 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1360100 28676542 ~ 28686138 (+)
G43682 NA other upstream 1557455 28484273 ~ 28488783 (+)
AMCG00013382 NA other downstream 1827 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 22091 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 157357 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 278249 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 363454 30425007 ~ 30430649 (+)

Expression


Co-expression Network