AMCG00013381 (LOC106564907)


Basic Information

Item Value
gene id AMCG00013381
gene name LOC106564907
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30016223 ~ 30024254 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013381
TCCGAACGTCGCTGGATAAAAATGGCCGCCGAGAAGCACAGCGAGGCCCTGGTAGCCGGAATGGACGAAAACAAGGAGAATAAGCCCGACGAGGGTCTGGGGCTGGAGATCCTGCAGATTATCAAGGAGTCGCAGCAGCAGCACGGGCTGAGACATGGGGACTATCAGAGATACAGGGGCTACTGCTCCCGCCGACTGCGGCGCCTGAGGAAGACACTGGGCTTCAAGATGGGCAACCGGCACAAGTTCACTGGGAAGAAAGTGACTGTGGAGATGGCGGCCAAGCGCAGCGAGGAGCTGGAGCGGCTGTGCGAGAGCCCCAAGGTCGACGCCAAGACCAAGCTGGAGGCACAGGCCTATACCGCATACCTAGCTGGCATGCTGTGGTTCGAGCTGCAGGAGTGGAAGTCGGCCATGGAGGCATTCAACAAGTGCAAGACCATCTATGAAAAGCTGGCCAGCGCCTTCACGGAGGAGCAGGCCGTGCTCTACTACCAGCGGGTGGAGGAGATCTCCCCCAACATCCGCTACTGCGCCTACAATATCGGTGACCAGAATGCCATGAATGACCTGATGCAGATGAGGCTGAGTGCCGGGGGGGGAGGAGGCATGATCGCCGAGAAGCTAGAGGCTCTGATCACTCAGACCAGAGCCAAGCAGGCTGCCACCATGAGTGAGGTGGAGTGGCGCGGCCGCACTGTCCCGGTGAAGATCGACAAGGTGCGCATCTTCCTGCTGGGGCTGGCAGACAACGAGGCAGCAATCGCTCAGGCGGCCAGCGAGGAGACGAAGGAGCGTCTGTACGAGACTCTTCTGGCCGAGTGCCGGGACTCCATCCAGGCCGTCCGCGAGGAGATCAAGGCCGACTCAAAGCAGCGGGAGAGAGCCATGGACACTGACACGGGGAAAGTCTCCAACCTCCAGTACCTGCACAGcTACCTGACCTACATCAAGCTGTGGACGGTGGTGCGGCGCAACGAGAGCATGGCGCAGGCGCTGCACGCCAAGCTGAAGGAGCCGCAGCCGGACGAGAGCCGGAGGGGCCCACGGCCCCAGGACCTAATCCGCCTGTACGACCTCATCCTGCAGaGCCTGGCAGAGCTGTCTGGGCTGCAGGGCCTGGAGGAGGACAACAGCTTCCAGAAGGAGGTGGCCCTGAAGACGCTGGACCTCCCTGATGTCCAGGAGCTGATCTCGGAGGTCAATGCGGAGAAGTACTCCCTGCAGGCAGCGGCCATCTTGGaCACCGGGGACGCTGCCGAGACACCGTCGCCCTCGCAGGTCCGAGAGACCAAGCCTCTCTGCGAGCGACTGGACACCTTCCGCCTGGACCCCGCCCTGGTGGGGAAGCAGCCCAACCTGGTGCAGTTCCCCCCAGACTTCCAGCCCATCCCCTGCAAGCCCCTGTTCTTCGACCTGGCCCTGAACCACGTGGCCTTCCCTCCGCTGGATGACAAGGTGGAGCAGAAGGGCAAGGGCGGCCTGACCGGCTACATCAAGGGCATCTTCGGCTTCGGCAGCTAATCCGGGCCCAGGCTCCGGCAGCGACCTGGGACTCCCAGCTCCCGGCCCTAGGCCCCTGCTGATCTGCGCGGGTCCCGGAGCACAGCCCAGTTCTCAAATTCCCCCTGAGCTCTGGTTCTGTGTTCTGTCGCTTGTTAATTCCCCCCCATCGTCCTCCCCATCGTCCCCCAGTGCTCGGGGTGGTCACAGTTAGATAGTATCTCAGATAATCTCAGTGAAAATAATACCCTTCGGTTTACAGTCTCACGTCACATGCTGAGGGTGTCTGTGTTCAGCACCGCCTCGCAGCGTTTCACCAACATCAGTCCAGATGCAGCAGACACAGCTGGCTTTGTTACCATCGCGATCTGGATAGGAGTTATAAACAAACGTATCGAagggtggtgtttttttttttaatcatcttgTTGGACAGACAACTATGAGTGGTGTAAAGGCCAGATTTTCTCAGACTGTTTAATTTtaagagaaacacattttaactcTCGATAAACACAATGTACTCCAGCACGTTTCGAGAACAGCTGTCCGCCATGCAACCGGGAGCCATTCGGATCTGCAAACAGCCAGGCGTTGGCAATGCAGCCGGTATTTTGGGCGTAGCAGCAGATTAATTGTCTAGAAAAATTTATCTTGGGATGTGTTGGAAAAAGTgggagtgtttttgttgtgtgtgtgtgtatgtgtgttcacCATGGCGTAAGCAACCTCACCGTTGCGTCAAAATACTGCGTCAGAGGCTCGGGAAGGGAACCGCAGCCCATTCAACCCTGTTTTGGGTGAAAGTTTTCCTTCagagttttaaaatgcaacaggAAGAGACAACTGTACTCTACTTGGCATCTGTTAAGAAGCTGTGGgggaaataaatgtgtaaatctcCTGGTAGAgtccacacactcactcactcactcactcactctgccCCGTGCTGTCCACCGTCTCTCCCTTGTTTAGGTACGCGTGGCTCCACGGGTCCCCCCCCGAGTGGCTACCTGCCCTGGGCTCTGCTGGCTTCTGCCCCTCTGTAAGAAGCAGGTGTTGGTGCCCCTCCGTGGTCTGTCCAGCATAAGCCTGTCCATCATGTCAAATAACCAAAACACCTTTCTGGAGAGCCAGTCTTACCTAATTACTGACTTCTTTACTGGCCTCTTGCAATCTGTTCAAACCCTTCtggcaacattattattattattattattattagtagagttttttttcccctctactcccctcccctccccgtCAGCCCGTGTCCtggcagtgttttttttgtcacaatTTGCCCAGTGGCTCCAGCAGCCCAGCTGGACACCTGAGTCCCATCGTCTCCCTTTGCTGCATCGTTTGTCCAGAAGGCACATGTGGTGAAGGGTCCCCTGTGTGTCCGGTCAGCGCGGCGCTCTCGGGGTGGTGGTGCGCTGCTCACAAATTGGATGTCACCATTTgggatttttaaatgaaatttcaCTCTTGAATAACTTAATGGATGCTGGAAGAACAGTCAGTTCATCAATGTTTGTCATAACTGAGAGGGACGACTGTCCAGAACCGACACCAGGATTTGTACTTTCCcattgagaacaaaataataatgataatcaaa

Function

NR:

description
PREDICTED: signal recognition particle subunit SRP68-like isoform X1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03107 SRP68; signal recognition particle subunit SRP68

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013381 True 3130 mRNA 0.56 15 30016223 30024254

Neighbor

gene id symbol gene type direction distance location
AMCG00013378 NA coding upstream 759 30011468 ~ 30015464 (+)
AMCG00013383 LOC108432077,LOC105013158 coding upstream 5529 30003896 ~ 30010694 (+)
AMCG00013379 smurf2,LOC103360001 coding upstream 25935 29968648 ~ 29990288 (+)
AMCG00013374 kpna2,LOC108432045,LOC108261381 coding upstream 71543 29939155 ~ 29944680 (+)
AMCG00013369 NA coding upstream 133101 29876174 ~ 29883122 (+)
AMCG00013380 NA coding downstream 9157 30033411 ~ 30045500 (+)
AMCG00013377 NA coding downstream 21984 30046238 ~ 30061553 (+)
AMCG00013387 NA coding downstream 140800 30165054 ~ 30167818 (+)
AMCG00013397 NA coding downstream 162586 30186840 ~ 30194163 (+)
AMCG00013398 NA coding downstream 183819 30208073 ~ 30217024 (+)
G43895 NA non-coding upstream 569525 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 813502 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 837957 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 857730 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 864889 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 431418 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 710282 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 712555 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 748127 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 749928 30774182 ~ 30774548 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 87526 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 349172 29640623 ~ 29667051 (+)
G43802 NA other upstream 911646 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1330085 28676542 ~ 28686138 (+)
G43682 NA other upstream 1527440 28484273 ~ 28488783 (+)
AMCG00013382 NA other downstream 39126 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 59390 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 194656 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 315548 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 400753 30425007 ~ 30430649 (+)

Expression


Co-expression Network