AMCG00013382


Basic Information

Item Value
gene id AMCG00013382
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30063380 ~ 30074748 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013382
CCAGAAGCCGGAAGTAGGGTTTTCCCGGTGAGAACAGCCGCCCGAAAGAGCAGCCGCTCGTTGCAATGGAGAGCAGTTAACGGTCAGTGGCGCCGGCTCTTGCCTCTCTGTATGTGAACACAtccagagggagagaggtagGATTTCTGACAGAAATACCGCATCTCCGCCGGGtaccagtggaaacagggcgACGCTACTCACCCGAGCAGCGGCGTGAGGGTCTGGCATGgcTTTGAAGCTGAAGAAAGGAGGGAATAGCTCCTTCAGTGATGTCATCAGTGACCTGTTAGGGGACAGTGATGAGCCCCCCGTCAAGGGCAGGTCTCCAGCGTGGGGCGGTGGCCCAGGGAGAGCTGGGGTCCTGCCGTCCCGCAGTGGGAAACGGTCTTTGCTGGACGATGACTTCTTCAGCAAGCTGGCAGAGGAGGCTGGCGATGAGGAGGTCTCTGACGTCTCCGAGGCGGACCCCCTGGCGTTGCTGGAAAGCTTGAAGGACATGGATGACATGGAAGCCGACTTGTTGAGCAGGAAGAAGCCGAGCTCCGCCCCCAGCCAGACCTCAGCAAAGGCTTCTGGGGGCAGGGGGCCAAAGGGAACGCAGGACACGCCTCCTGGACCCGGGGACAGGCCCGGGGGTCAGGGAGCAGGTGGGGGGCCAGGTGAGGACTCCATGGCCGAGGTCAGGAAGCCCAGCTCTGCCCCGCCTGCTCCCGCCACCCGCAGCTACAAGAAGTTCAGCTTCACCGACAACGAGGATGATGGCAACGCCAACCTTCTTGGCCTGAACCCAGACGGGGAAGGGCCGGAGATAGCTAGGGATCCTGCAGCCCCTGACCTGCACAACAAGAGTCTGAGGGGAGCTGTGCAGGCCGGACCCTCACGGCTGTGTGCGACTGCAGCTCTTTACCTGTGTCCTgATGTGGACGACCCCTTGGCCGACTTTCTGGATGACCTAGATGAAAGGAAGGACTCCAAGCCCGGTCCGTTGGAGCGAAAGCCCAGTCCCCCCGAGACGCCCAGTGCCAGAGAACAGGAGACCGGTCAGTGTGCCTCGGGGAACGGCCATGGTTCCAGGCCACAACACAAGCATTCACCTCTCGCTGCCCTGACCCCCAGCAGTGAGCCCCCCGTGCCCGCCAGGACCCGGCTGGACGAGATCCTGGGCCGTGGCACTGCCCCCCGGCTCCTGGAGCGCCCCCTCACTGGCGAGAGGAAGGAACTGCAGCCGGAGAAGAGCGCGGGCCCAAAAGATCCTGGGCTGGGGGAGGATGACTTCACCTTCGGGGCCTACCAGCCCACCATGGCTTCCACCCCCGAGGGCCGGCAGTCCCGCAGGCAGTCCGTCAGGTTTTCCACGGAGGACGTCAGCGGGCTGTCCCCAGACCGGAGGTCCAAGCCCTCCACCCTGGCCACCACCCCGGGCTCGGCGCGTGCTGGTAAGACTGCGGCGGATTGGCTGGGGCTCaaacaggaagaggaggagccaGAGGAGGAGCCCTTCCCCACTCCCCCCAGCCCCTCCCCGGGCATCAAGTCCCCCGCCAGCCGCCCCCCCTCAGGAGTCAAGACCACCGACctccccgcccccgccccctcccACTCCTCCTCCGCTGCCAAAGCCAGCCAATCTGCAAGCAGGCCGGGGGTGTCGATCAcccaggaggaggaggaggattgGCTGGCAGGAGCTCTGACCAGGAAGAGGTCTCAGGGGGCGgcgagggaggagaggaaggaggagaagagCTCTGCCCAGCAGGAGCACCTGGGGCTGGGAGAGGAGGTGGACCTGGACTCGTTCCTTAGTAAACGCAGCCCCTCACCGGCTGCCAGGAGACGAGCTGCGGACACGGTGGACCCCAGCAAGGAGCCCAGCTCTCCTTTGCCATTGGAGACGCCTCGTCAGCAGGCCATGCCCCCGCAGCCCGGTGGGCGGGGCAGAGAGGAGAAGCCCACAGCTGCCGTCCATGGCAACCATCACCCGAACACCCCCCCGCTGTGGTGCCCAGCGCAGTGTGGTGTAGTTACGGCACAGAGACCGGTGGAGAGCAGCACGCCACCCCCCCAGCCACAGGCGCCTCTCTCAGCCGACAGCCTTCAGCAGCTCCTCCTGCAGTCACAGCTGGCGCAGTCCCAGCTGTGGGGGCGAGGGGGCGCTGTGGACCTGGCCGCCCTGCAGAGGCCGCCGCGGGGCAGTGAGCAGCTGGCGGGGGAGGAGGCCGTTCAGAATCGCATCGCACAGCTGGAGGGACAGGTGCGGAAGCTGCAGCTGGAGCTGGGACAGGCCCAGATGCTGCTGGAGAGCATgcagcagagacacagacaggacaCTGATCTCATGGAGAGCACACACAGGGCACGGGtgcagctgctggaggaggCGGCTGTGCAGCGGGAGGGGTGTCTCAGGCACGAGAGTGAGGAGCTGCAGGAGCGTGTGGCCAGCCTGGTCCGGCTCGGGGAGCAGGAGCGGGCCGAGCTGCAGGCCCAGTACCAGCGCCGCCTGGCCCAGGCCCAGCAGGAGAGGGACCGCGAGGTGGAACGGCTGCGTGACCTGCAGAGGAAGGCCATCCTGGAGATGAAGAGGGAGCACGAGGAGCAGCTGGCGCGCCTGAAGCGGCTCAAGGACGAGGAGGTGGACGCCGTGACCAGCGCTACCTCGCAGACGCGCTCCCTGGCCGGGGCCATCGAGCAGATGGAGCAGTTCTCGTGGCGGCTGGGAGAGCTGGCCTCCCGTGTGGAGAGCAGCCATGAGCACAGCACCCAGGGGCTGGAGCAGGGGGCGCGGCAGCGGGACCAGCAGCTCCGAGtgctgcAGGATCGcctggagcagcagcagaaggaCACGGAGGGGGAGCGATCGCGGCTGCAGGAGGTCATCGCCAGGATGGAGGCGCGGCTGTCCGAGCAGCAGAGGCAGCTGGAGAaggAGCGCTGGAGGGTGTCCGCAGAGCAGGCCAAGGCCGAGGCGTCCCACAGGGcgctggaggaggagagacgCACACTGACCCAGAACATCGCCATGGAGAGGGAGGAGCTGCAGAGGGCAAAGagcGCCCTGCTGGAGGAGCAGCAGGCGGTGATGACGCGCTGTGCCGAGGAGCGCCGGCGGCTGGCGGCCGAGTGGGCAGAGCTCCATGCGCAGGACAAGCTGCGGCAGGAGAGGACCGAGAGGGAGAGCAGCCGGGCACTGGAGAGGGATGCCCACCGGGAGGGCACCATCATCAGCCTGGCACAGGAGCAGGCAGAGCTGAAGCTGCGGGGGGCAGAGCTGCGTCTGCGTGAGGAGGCGCTGCTGGCGGCGGAGCGCTACGAGGAGGGCGATCGTGCCCTGCGGGAGGCCCGGCAGGTGGCGTCGGAGCAGCAGGGCCGACTCAGTGCCATTCAGCAGCAGAGGGACGCCCTGAGGCAGCAGGAGCAGCACCTGCACCAGCAACGAGTGAAGCTGACAGACTCACGCAGGCAGTTGCAGCAGCTGACGCAGGCCCTGCCCCTCGGCGCCACACCCGTCCTGGCAGGTTTCGCGCCCCAGTTCACCAGTACTCAGCTGCTGCCCCCCCTGGAGCTCCCTCACGCCCCCCCTGTGCCCGATACCTCGTCCTCGGAGCTGCAGGCCCGGTTGGCGCTGCTCAGACACACTGCGGAGAAGGACAGGGATTATCTGCAGGACGAGCAGTTCTTCCTGGAGACGCTGAAGAAAGCACCGTACAACATGTTCCACACGGCTTGACCACCCAGGGGTGACGACTGCACACACTCACCAACTCCTTCAAG
>TU54935
TGAGAACAGCCGCCCGAAAGAGCAGCCGCTCGTTGCAATGGAGAGCAGTTAACGGTCAGTGGCGCCGGCTCTTGCCTCTCTGTATGTGAACACAtccagagggagagaggtagGATTTCTGACAGAAATACCGCATCTCCGCCGGGtaccagtggaaacagggcgACGCTACTCACCCGAGCAGCGGCGTGAGGGTCTGGCATGgcTTTGAAGCTGAAGAAAGGAGGGAATAGCTCCTTCAGTGATGTCATCAGTGACCTGTTAGGGGACAGTGATGAGCCCCCCGTCAAGGGCAGGTCTCCAGCGTGGGGCGGTGGCCCAGGGAGAGCTGGGGTCCTGCCGTCCCGCAGTGGGAAACGGTGAGTGAGACAGGCATCAGGAGACAGGAATAGGGTGTAAAATGGGTAGGTTAGTACCTGGTATGGTACTTATTagggactacgtcaatctggaggtccatcagaggggcaaggaggaagcctttaagaactggcagatacaagatctgggggagctcaggatcccatgatgggacccacctccggggacggatatctccccctgctggagcccgagtccaagatcttttaacctttttatgaaaagattgttttttaaaaatgacttaaaaaaaaaaaaaaaaaagaattttaactgtttttaaagatttagttgtttttaaaagcacttcttttgtttgggtttcttgcttagttttgttctgtttttttcttttgtcaaatacattggccgttaggattttgattttaaatgcatcggactgttttggtttgttttttatttttatcgtttttatttgtttttttgctttgtccggtgcattttcagttaatttcaatgtatttgaccttttttgttggtttgcagtttttgctttaatcactagtttgttttattgttttgtg

Function

GO: NA

KEGG:

id description
K16471 FBF1, ALB; Fas-binding factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013382 True 3777 mRNA 0.66 30 30063380 30074748
TU54935 False 926 lncRNA 0.45 4 30063408 30065492

Neighbor

gene id symbol gene type direction distance location
AMCG00013377 NA coding upstream 1827 30046238 ~ 30061553 (+)
AMCG00013380 NA coding upstream 17880 30033411 ~ 30045500 (+)
AMCG00013381 LOC106564907 coding upstream 39126 30016223 ~ 30024254 (+)
AMCG00013378 NA coding upstream 47916 30011468 ~ 30015464 (+)
AMCG00013383 LOC108432077,LOC105013158 coding upstream 52686 30003896 ~ 30010694 (+)
AMCG00013387 NA coding downstream 90306 30165054 ~ 30167818 (+)
AMCG00013397 NA coding downstream 112092 30186840 ~ 30194163 (+)
AMCG00013398 NA coding downstream 133325 30208073 ~ 30217024 (+)
AMCG00013394 NA coding downstream 181535 30256283 ~ 30263941 (+)
AMCG00013395 NA coding downstream 204443 30279191 ~ 30283556 (+)
G43895 NA non-coding upstream 616682 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 860659 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 885114 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 904887 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 912046 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 380924 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 659788 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 662061 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 697633 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 699434 30774182 ~ 30774548 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 134683 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 396329 29640623 ~ 29667051 (+)
G43802 NA other upstream 958803 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 1377242 28676542 ~ 28686138 (+)
G43682 NA other upstream 1574597 28484273 ~ 28488783 (+)
AMCG00013388 NA other downstream 8896 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 144162 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 265054 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 350259 30425007 ~ 30430649 (+)
AMCG00013416 alyref,LOC106606979 other downstream 416079 30490827 ~ 30496613 (+)

Expression


Co-expression Network