AMCG00013384


Basic Information

Item Value
gene id AMCG00013384
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30040205 ~ 30061634 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013384
ATGTTGGTCAGGCACCATCTTTATTCCGTGCAGATGTTGCCGGCACCTGGAGTCTTCCACTTCCCCTGGGAGATCAGATCTGGGGAGGTCCAGGAGGGGGCAACAGTGAGGACCTTTGGCAGGCTGCAGAGCTACAGTGCAGAGCTGTCTGAGGCAGTCCTCGCCACCCAGCACGGACCCACCCAGCACCAGCTCACCATCCACACTGGCTTCGTGGAGCCCTTCGCTGCCCTCACTGGAGCCCAGTATTTAGTCCTGGGAGAGCTGGAGAGCAGGGACGGGGGCGCTGTGGCGGTGCGAGCGCGGATCCTGAGCTGTGTGGACGGGGCCAACATGGCCATGCTGCAGAGGGCCATCGCTGAGCAGAGGAGCTActtcctggagagagagagagcagggggcCAGGGGAAGCCCAGCCCTGACACAGAGCAGCAGCCCCAGCCCtgagatgtatgtgtgtgagagtgagtgagtgtgtgtgttgtgtgtacacATGCAACTCCAAGGTGCAGTTTCAATACAGGGGGCTTTAAAGTCAGGAATTATTGTTTCCAGAATTGAGGCAGTGTGGACCTTTACACAAACAtttacctgtgtgtgttttacctgcagctgtgtctgtgagtgtctgtgcGTGCGTCTCCCCTGAAGAACagctgaattaaaatatatttttacactgaTTTGTTGGTTGTGCATAAACTAGTCTCAGTTCAGTTCACTGTATAAATCAGGTACCAGGGTTTCTTGCAGTGTAATCCTGGCCAGTGAATATtgaacaataaagaaaaattaaagtttttgttttggtaattcGATATGGGAATTAATTGATTACTGCTTGGTACTTGACAAACAATCACCACAGCAGAAGTAAATGAGCCTTcttgaacaaaaaacacatttcttagcTTATTTTTTGATACAGTAGATTTTAATGAGGAATATTAATCGAGAACAACATCAATCAAAAGTGTTTGGAGATTACAGGGAATCAAAGCATCTCCAAAAGCTTGTAATTTGTAAGGTGCTGGCTaataaattgaaatacacattAACTAGACCCTTTCACCTCAGtaccataataaaaaaaacatctatctTGTGTATGTGTCTCCGTGgcacagcaataaaataaatttcataacatttaaataaagttgtttACAACACTTGAACCCCCCACTTatgacagcaacaacaacagaacaaacacacagaagagTAAACCATACAGGGAGCTCCGCAGTATTGTTCTAACTAGAGGAACAGGATAGTATTGTCAGACCGGTGTTTCCTGAGATTAAGAGttcttttcatcttttaaatttGGTGTATTACGTTTCCTGACCTGTCTTCATCTGTACGTTGCCCCATTAACTGAGAATAAAGTAAACCCAGGGGAGAGTATCTGGAGAGTCTTGGGGAAGGAAGGGAAGGGGGTCTGGAGATTGGTGTGGTTATCATTAGCGGACAGGGTGCATCAGAGTTTAAAGTCCTGTCTTCTCCCTCGCTCTCTAGTAGTAGGAGGAGTACTTGTAGGTGCGACTGCTCATGTAGGAGGGGTTGTATGAGGGGTTGTAGGAGTCATTGGAGGCAGTGCCGGCTGCGGGCAACAGGGGCAGCCCGGTGGTGCGGTCCCTCTGGCAGCGAGCCATGGCCTCCTTGTAGCTGATCTTCTCCTTAGTGATGGGGTCCACAAGGTCCTTGGTAGAGTAGGTTTCATCCTGGAGCTCCCTGGCTATGGTGCTGTCGATCATCTTCTGGTTGACAGCCTCCGCGATGCTGATGCGGCCCGTCCGCCTGGGGTCCACCAGGCCGCCGGTTAGGTTCTGCACATCCATGTAGCGCATGGCACTGTCCTTGGGCATCCAGCCCTTCTGCACCGCCTCGCCCACCGAGAGCCGCTGCTTGGTCATGGGGTCCTCGACGCCGGTGAAGGCCTTCTGGGCATTTAGCAGCCTCTGCAGTTGCGTGTTCTCCACGAGCCCACGCTCCGCCGCCTTGTGCACCGAGTAGCGGTCCCTGTTGCTGATGTCCACGATGCCCCCCGTGGCCGCCTGCGCCTCCAGCAGCTTCTGGCCCGTGCTCGGGTCGATCAGCTTGCGGGTCATGGCGCTGCGGATGGACATGcggttgttggtggtggtgtccAGCACGCCAGAGATGGGGAAGCTCTCGTCCCCGCCCAGGCCACTCATGCTGTTAAAGCTACTCATGCTGTTCATGCTGCTCATGCTGCTCATGTTGGGCGAGCTCTGGGTGTAGGTGGTCCTCTGTGGGGTCAGGGACGAGCTGAGGGACCCGATTGCCGTCTTCCTCGTCTCCCCGGCGACCAGCAGGGCGAACTCTGAGATGGGGATCTTGCCGTCCCTGTAGAGCTGCACCTGTGCCTGCGTCACCCTCCTGTCGCGCAGGGCATCCTTGATGGAGTACTGCTTGCCACTCTTGCGGTCCTGCAGAACGGAGCTCTCACCGTCGGGCCCCGTGGTGGTCATCTCCTCCCAGTCACACTCCAGCTCCTGCAGGTGGATGTACTGGGCGCGGTCAATCAGGCCCTGCATGTAGGCATCGTACGGGGACATGTCCTTCCCTGTCTCCGGGTCCAGGATGGTGATCTTGGTGGACAGGTTGGTCTCCCTCATCTGGGTTTCGCTGTTCTTGACTTCCTCCCTCCTCAGGTTCTCCAGCAACTCACGCACGGTCATCTCTCTCTTGTTCAGCAGGTCCTTCTCATCCAGGATCTCCTGTTCCAGCCTTTGTACCTCCGACTCCATTTTGATGCTCTTCTGCCGGCTCATCTGGCTCCTCTCGCTCATCAGCCTGGACTGCTGCTGGAAGCTGATGCTGGTGTGCTGCCGCTCAGACTCCAGTGTCCTCAGCTCCATGGACAGGTTCTCCTTGTCCCGCAGCAGGTTGTCCCTGGTCTGGCTGAGCTGCGACTCCTCCCATGAGGTGTTGGACCGGGAACTCTGCACCCGGTTGAGTTTCTCGGAGAGCCGGCGGATCTCGTCCTCAAGGTCACGGCGGGCATTCCTTTCCTGGTTGACCAGGTCCCTGAGGCGGGAGCGCTCGCCCTCCAGCAGCTTGTCCTTCTCCACGCGAATCACTTCCTTGTAGACCGTCTTCTCCACAGACTTGTCCCTCTGCAGCACCTCCAGCTTCAGCGTGAGGTTCCTGATCTCCCTCTCCAGACGCATGATCTCGCTGCTGTCCTTGTCCATGTCTATGCGCAGGCTGCTGGTCACTGCCTCCAGCTTGGGGTCCCTCTCCACCTTCAGCACCTCCTCCATGATGATCTTCTCCTCAACGGGTGGCGGCGCATTCTCCAGCTCGTGGATCCGGGAGCGGATCTGCTTGAGCTCCATTTCCACCGCAATCTTCTTCTGCCTCTCATCCTGCTGCTGCAgcgccctctccctctccagcacCAGGGCCCTCAGCTGCTGCACCTCCAACTCCAGCTGCCGCCTGGACTTCACCTCTTCGTCCAGGGCCCGGCTCAGCTTCTCGTGCTCAATGATCTGCTGTGGGTCCTTCTGCAGCCGCACCACCTCCTGCATCACCACCTTCTCCTCGGGCTTCTGCCTCTCCAGCATGATGTACTTGTTCTGCAGGTCGAAGACCATCTCCTCTATCGTCCGGCGCTGCTGGACCTCCTCGCGCACCACCCTCCGCAGCCGATCCGCCTCCTTCTCCAGCAGGGGATCGCTCTCATACTTGATCACATCCTTGGTCACCAGCTTGGTCTCCACCTTGGACTTCTCGGCCTTCCACTCGTCCCTCTCCTTGCGCAAgcgctgcagctgctgcagagtGTGGTTATAGGTGTCCTGCAGCCGCGTCAACTGGTCTCCTAGCCGCTGCAGCTCCCGCTTGACCTCCGGGCTCCTCTCCTCTTTCACAACCTCCTGGGTCACCTCCTTCAGCTCCACCTTGGGCTTCTGGGACCTGAGAGCCTGCAGGTCCACCATGACCAGGCTGATCTCCTTCTCCAGGCCTGCACGGAGCTTGCTGGAGTCCTGCAGCTCTCTCCGCAGGCGCACCAGCTCCGTCTCCGTTTGTGGGTCCACCCTGAAGATCTCGTTGACGATCTCCTTGATCTCCACCCTGGGTTTAATCTGCTCCACCTGACTGAAGCGCAGCTGCATGTTGCTGATCTCTCGCAGAAAGCTGGAGTTGCggtttctctcctcctccagcatGGAGCGCAGCTTCTGGGCCTCATTAATGAGCTCGGGGTCCTGCTCCACTCGCTTCACCTCCTTCGTGATGACCTTGGGCTGCACGGTGGGGATAATCCTCTCCAGGGTGTTGATCTGACTCCGGGTTTGAAAGATCTGGTCGTTCAGAGACTTGCACTTCTGGCCCTCCTCGGAAATCTCGTTCTCGAAGGTCCTGACCGCCCTCAGCATCTCGGGGTCCTTC
>TU54905
TTGATCAGTCTTGCTTTATTGTTAATCAGTCAGTGGGAAAAGGCAGTACAAGACAGGGACTTGCAATAAAAAGTGCTTCTTCttaacacaatataaaacatgcCCCCAAgaatattttcttgttattaaaagtaattaagatCACATTTGTGAACCACCACAGTGTTTACacatgattgttttaatttatatcacATACTAAGAAAGGctgcaaaaaaacaaggatGTGTGACAGATGATTTGCAGTAAGTTCAtagaagtaaaacaataaaacgtTGTTAATTAAACCTTTTGATACTAACGAACGACTACtggatttcaaaaacaaaatactaattcaagtaatgaattaaaacagtctttcctgGAAAAGAAATGGATTTCAGAATCAATCGATCAGCGTCAACTTGAGATCAGTATCAAAGGTCAGTATCCAGCTGAGTGTTTCCATCATTTTTTACGTGTAAGTTTCAGTCATGTTTAAGGTGACAGGTAAAACGGAGTTACAGAAGAGTCTTCTACACACAAGTCTCCTCGCTGCTTTTGTCCAGGTGGGCTTGCCGTACTCCTTTAGGGACTGCGTTGCTATCTGAGCTCTGACATTGTCATGCAGATGGCTCATTGAACACACTTCCAGCAgggtaattaaaattaaaatattattaccATACCAATACAAAACAAGCAGCACTATAGTCCTGCATACTTACAGAAaaggaaacacatttaaaaaatattattcatttcaCCTTTTTACTGCTTTTGCTGTTCCAGGCATGTCAGACTTGCATGCCTGGGAGCCCGAGTCATACTCTGAGCAGTACGGCAAGCCCAGCTTGGACAGAAAGGGTCAGAACTCGTCTATGcaacactgctgttgtaatcCAGCATTCCCCATATCAATCTGTCCATCTTAAAACACGGCATTTGGCACGACTGAATCTGGCATGAACATGCAGCCACCTTGCTCTCCTCCCTGGCCACACAGGGGCTTACGAGCCAGCCAATTATCTAACTACCATCTTCCCCTCTGAGCTCTGGACTGCCTACTGTTTCACTAATGCCATTCCCTGCATCAAAAACTGTTTAAAGGGGGTCTGACTactacaataaaataaccaaaagaacTACTGCACTACTTTTTCTAAGATTAAAACTAGAGAGCCATACAAAATCGGACAAGATACAGTAATAACCCTCCCAGCGGCTCCTCCAGGCCTAGACAGGCACTGGTCTTGCCTAAAATCTGCGCTAATCTGggcctgtgaaaccagcccataGTGTTTCAAACCAATGTGAAAGAGGAATCACAGCTTTGCACACTTCGAAaacatccccccctccccaaaaatCGTTTTACTCCATGTCTCTCTTTCGCCTCCCTGTCTATGTTGTTCTTCAGGTCAAGCATACTCTTGGAATGAAGGGatcaggaagaaaaacaaaatgtagatgactgaatgaaaacaacacaaagaaggaCAAGTAGGTCTTAGGAAATGTAGGCAGTGTGCAGCGGGTCAAATACAGAAggaagaattttttttttttgtcacagcATTTGTACCTTGGTGTAGAGGTCTTCACAGGTCCAAAAATATGTGCCCGAACTCGAAGAGACCCGGAAATGTGCTATTCGGAACTGACCCGGACCCGTCtgttatttgaaatttgaaatctggacccggacccagccgggacacacagacctgatTGAACCTGATCGGCACAGACCCCACAGCTAATcgctattaacaagttaatttacaagctgtgaaaataaaactttgtgtcttacctaatgtaacgttagtagcttctctcctgtacctgacCGTGACGCATATAGTCCGTCCTCCTTGCCAGGAaagttggtaaaataacatccatgaagctcctcttgctgattgaaagcgcctgtataatccactcattatttcagttcaaaagTCCACTCGCTGTCACGGTGGCAGAGGACGAACAcgactttgcagctttgcagttttttgtatctcgcataatatgataacttccactgtttgcccttttgaactataataatgATTGCTCATTCAGTGCCAGGCCGCTGACATTAGCATTACTAATCTGCTGTCATTGTGCTCTGAGACGCGTCTGCCATAGATTTAGATACAAAGCGAACAAACTCCAACCACGATATCTCAAAAATCGCGCCGACGCCCATAATGCACTTCGGTTTACatcatctgtcaaacaccgatatggcggaataagtcccgccttataaataaaagagccaatcgtcaattggtaaagtcaCTGCATCACTCGGGTATTatacacaatgttaaacagacccgggacccgaagtacaagaatgggacccgacccggacccggctgaccgtttaaaatatggacccgAACCCGTACgggtggacccgtgaagacctctacctTGGTGCCATTTGTAGCACACAGCAGCAGGGGGCTTCTGGGACCTGCAGGTCCACCATGACCAGGCTGATCTCCTTCTCCAGGCCTGCACGGAGCTTGCTGGAGTCCTGCAGCTCTCTCCGCAGGCGCACCAGCTCCGTCTCCGTTTGTGGGTCCACCCTGAAGATCTCGTTGACGATCTCCTTGATCTCCACCCTGGGTTTAATCTGCTCCACCTGACTGAAGCGCAGCTGCATGTTGCTGATCTCTCGCAGAAAGCTGGAGTTGCggtttctctcctcctccagcatGGAGCGCAGCTTCTGGGCCTCATTAATGAGCTCGGGGTCCTGCTCCACTCGCTTCACCTCCTTCGTGATGACCTTGGGCTGCACGGTGGGGATAATCCTCTCCAGGGTGTTGATCTGACTCCGGGTTTGAAAGATCTGGTCGTTCAGAGACTTGCACTTCTGGCCCTCCTCGGAAATCTCGTTCTCGAAGGTCCTGACCGCCCTCAGCATCTCGGGGTCCTTCTCCACCTTCAACACCTCCTTCTTCACCACCCTCTCCTTGATGATGGGCTGCTTCTTCTCCAGGATGGAGATCTCCGTCCTGATGTGCACAGTCTCGTTCTCCCGGGAGCGTACATTGTCCTTCGCCCGGCGGATCTCATCTCTCAGCCGGTTGGCCTCAACATCCAGCTGGGGGTCCCTCTCGATTTCAGTCACCTCCTTGGTCAGCAGCTTTGGCTTGATGCTCACCATCTCCTGGTCCAGACTAACAATCTTCTTGTTGATCACCTCGATCTCAGTCTGGGTGGCGGAGCGGCGCATGTTCTCATCCTGGATCCTGTTCTTCAGAGAGAACAGTTCACTTTCCAGCTTGGGGTCCCGGTAGTACTGCaccacctccctctcctccacaCGCTCCACCCCTCTCCTGCTCTTCAGGGACATCATCCTCTTGCGGTAGGTCTCCAGGTCCTTCTTCAGGTTGTCTGTCTCAGCCAGGTTCCTCTGCTGGCTCTCCATCTGCAGCTGCTGTTTCACCACCACCTGGTTGACCTTGTCCTCGTTCTGTTGACAGGAAACAACAGTTAGATCCCCACGGCAATGGTTGTGATGGTGCCCCTCTGGAACAATGGTCAGTGCAGGGGCAGCTCATGATTACATTCCACTGTTTATCCCATTTCCAGTCTAATTTTGGTTAAgaagtgtacatatatatagtatatagtacaTCTATACATATGACCAGGTTACTAATCTGCCGTTTCATTGCTCATTCTAGGCTCATTGTAAGATACTGAAttctatgtaaatatataagTTGGTATATACAGATCTGGTATAAATTAAGAGAcaactccaagttcagaaatcaatgttaagtggtctcttaattttttccagagctgtatatatttttaacaggcTCGTAGGACCGGTCTGGATTTGCGCACCTGAGCGACGATGTTTTTGGCGAAGCTCATCTGGTTGAGCAGCTGGTTGTTCTCCGCAGACACCTCGGCGTATCGGTTCACCAGCCCTTTCTCCTGCAACACAGCGCCGCCAGCCTCCGTCACAATCcaagtgtgattgtgtgtgtgagtgtgttattgtgtgtgtgactgtctgtcattgagtgagtgtgggtgtggttgagtgagtgtgagagtgagtgagattGAGTGTGTGATTATGTGATTGTGTGATTGATTGAGTGTGTTATTATGTGATTGTGCCACTCTACCTGTTTCTGCACACTATCGGCCAAGGAGGAGCTGTGCAGCCTCTTGGCTGCGGTGGCCCCCAGCGAGGGGTCCAGCGTGCTGCAGTACTTACTGGAGTTCGTCTCATACTCCTGTTGGGGGAGAAAGCAGGCATCAGACGGAGAACGGCCAACAGCGCTGCTTAGCACTGCGATTTCATAATTGCTTTTAtagaaggaagagagagaaggagggaggtaGAGGGGAGAAAGGGGGAGAGCAGAGGCTCAAAATGAAGACATGGTcagaggggaaagagagagagacaaccaGAGACGGAaacaggtagagagagagagagacagggactgCTGTGATCCAGTCCTGCCTGGCCTTACGCTGAGCACAGACTGCAGGTCGTTGGACAGGTCCACCACGCGGTCCAGGTCATCGCCTTTCCTCTTGATGTCCTCTACCACCCTCTGcagaacagacagacacattgcGCTCAGTCAAGGTGGATAAAGGCATCAGCCACATAAAactcataatcataatcataataataacaaagtgGCTACTGGTAGATCCTAGTTTGGGAGCTATTTTGAATTCACAGCCATTTTATGTACTGATCCCGGTCCACCAGTGCCTCCCCGACACACTCACCTTCTGGGAGCTCTGCTTGGCGTTGATCTGGGACAGGTTGTCCATAGGGCTGATCTTGTTGTCGGGCAAGTTGCTCAGGAAGGAGTTCAGCGATTGGGTGTTGCTCTGGAACGCCTGGTGCTTATTGGCTGCCTCCTGGGCAAGGTTCTCCCTGGAGGAAGGATGCCGTATCATGGGCAAAACATCAGACGCACTGCGCACAGTCCACCCAAACCCCGGGTTCAGTTTTATGCAATCCAGCCCAATCCAGCCCATTACTTTTCTCAACTCAGCCCACCCTGCTTCCCAGTCCAGCCCACCCACCTCTGCAGCAGCTGGTTGTTGACGGTGGCGTAGCGGTTCTTCAGCCGCTGCACCTCAGTCTCCTGGCGGCGGATGTCGGGGCAGAACTCCTGGTAGCCCTTCTGCAGGGAGCTGCACAGCTGCTCTGTGGTCTCCAGGTCACGGCTCAGCTTCTGCATGTCGTCCTGCTTACTAGCCAGATCCTTCCTCAtgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013384 False 4428 mRNA 0.56 4 30042590 30047619
TU54905 True 5291 lncRNA 0.48 3 30040205 30061634

Neighbor

gene id symbol gene type direction distance location
AMCG00013385 NA coding downstream 37323 29991300 ~ 30002882 (-)
AMCG00013376 LOC107081327 coding downstream 105035 29931650 ~ 29935170 (-)
AMCG00013372 psmd12 coding downstream 236962 29796583 ~ 29803243 (-)
AMCG00013373 LOC106564877 coding downstream 246079 29746227 ~ 29794126 (-)
AMCG00013361 NA coding downstream 590724 29445941 ~ 29449481 (-)
AMCG00013389 rhbdl3 coding upstream 30228 30091862 ~ 30100704 (-)
AMCG00013391 NA coding upstream 56166 30117800 ~ 30126501 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding upstream 65063 30126697 ~ 30153358 (-)
AMCG00013392 NA coding upstream 93628 30155262 ~ 30164478 (-)
AMCG00013404 NA coding upstream 260631 30322265 ~ 30332700 (-)
G43919 NA non-coding downstream 540632 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 918886 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 922244 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1301432 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 1322265 28716291 ~ 28717940 (-)
G44086 NA non-coding upstream 27169 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 245392 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 323052 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 472337 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 478679 30540313 ~ 30562691 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 11975 29926383 ~ 30028230 (-)
G43869 NA other downstream 785889 29253396 ~ 29254316 (-)
G43684 NA other downstream 1572299 28467312 ~ 28467906 (-)
G43594 NA other downstream 1967418 28068213 ~ 28072787 (-)
G43473 NA other downstream 2471054 27568764 ~ 27569151 (-)
AMCG00013386 NA other upstream 18980 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 104183 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 225008 30286642 ~ 30290867 (-)
G44243 NA other upstream 338253 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 394093 30455727 ~ 30464091 (-)

Expression


Co-expression Network