AMCG00013387


Basic Information

Item Value
gene id AMCG00013387
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30165054 ~ 30167818 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013387
GAAACGAATTGtgcacagaaataaacataaataagtgCTAATAGTTAGATACCACTCTGTTCCGAAAGcgcaaataacacaaataaacaattcatTGGCCGTCAAATGTAATTGACACTGCCACTGGGGGAGCGATACACGGCGGGGCTGCGGAACCAAAGTGCTCCGGAACCAAAAGCTCCGCGGCCTCGTCTGCGCCGAGTGCGGGACCAGCGTCACCCAGCCGTGCGGGCGCAGATGTGGCTCCCAAAGCGTCTCCTACGAGCCGTGGTCACTGAAGGGTGGCATGGCTTGTTCCGCAGCCCCATGGCCACCCCACCAAAGCTGCCACCGCGCTTCCTGCACTGCACCTGCTGCCGGAGAAGCCACAGCCCAGAGCGGAGCGGCGGGGCTCAGCCCTCGCTGGACTCCTGCTACACAGAGGCGCAGCGGACGGCCATCCTGCAGGTGCTCAACCATGCCCCTGAGAGCCAGCTGGCCGGTGTGAAGCTGCTGCGTGGCAGGAAGTCCGCCAACATCATGGAGTACCGGGCACGGCACGGGCCGTTCCCTGACCTGGAGAGCGTGGTCAACGTGCCGCTGCTGAAGCACAAGACGGCCGCTGTGGTGTTCCACTCCATCCTGCACCCCGAGGAGAAGAGGCAGCCCAAGGCCCAGCCGCTGCGGACCGCCAAGTTCGTCAAGCCGGAGTTGGAGTGGAAGACACTGCAGGAAGCCAGCAGCATCGTGTCCATCGTGTGTGGCACCAGCAGGATCGCCTGGGCTCACGTGGACCGCAGCCCCTGCGTGCAGGACTGGCAGCAGGAGGAGTGCCAGCACTTCATGAAGGGCACCTACCTGGCCTCCTCGTACCTGGAGGACGTCGGCGCGGTGGTTGACCGGATGCCGGAGGCGGACTTCTACGTGGTGGAGAAGCCGGGGATGTCCCTGCAGAGCGCCACGCTGTTCCCGGTGACGGTGCACATGCGTACGGTGGAGGCGATGTTGTTTGCGCTGCTGGCGGGGCGGGCCGGGGACAGTGGGGGGGTGCCCAGGGTCCTGAACATGATGCGCATGGCGGTGGGGCGGCACTTCGGCCTCATCGTGGGCGACTCGAGGACCAGCGGCGCCCAGCTGGTGCAGCAGCTGATGACAGACTCGGTGGGGCGCAGTGGCCCCCGCCTGgccttcccccccaccctggTGGTGCGGTACAGGAACGCCTTCCGCCCGCACAGCTGGAACCAGGGGGAGGAGATGTGTGATGCAGTGCTGCAGGCCCTGGCCTTCTATGAGCTGCTGAGTGACAGCTAGACCGGATTGACAGCGTGGCACCCAGACCGTCACCGCACCCAACAGAGACACAGCTGGTTATGCCAGTGTGGGTGTTCGACTCAATTACCCAGTCCCTGCCGTATCATTTTTGTCCGATAAATAAGACATGCCCTCACAGCACATGTGCCACTGGCCCTCAACGAACCGGTTTAATTAAGAACCGAGGCCGGAGGTTGCAGTTATTGTACCAACACGTCTTTTGAAATGTTGTTCTTATGTATTAAATCAACAGCTGCTCTTGAAAAGGTACCCAGATAACAGAGCCCCAGGGTCGGGCCACACTGCGCGGTGGTGGGGGTGCCCCACTGGACAGTGTGGTCTGCTGCCCCCCTCCCAGAGTCCTCTACACAATTTCTACACACTGTATTTGTCTCCCACAGAAACAagatccattttattttttctaatgttAAACTTTCAtaggtttaataaaaaaaaatgtacatgtgactttatagaaatgtttttgctgtcaaacaacatttatttctttatataaaacatctttttaaaaaaaaaaaaaaaaaaagtagaccCTCGCACTCCTGAATCATAGCCCAGGTTTGTCG

Function

GO:

id name namespace
GO:0006390 mitochondrial transcription biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0006259 DNA metabolic process biological_process
GO:0042645 mitochondrial nucleoid cellular_component
GO:0030337 DNA polymerase processivity factor activity molecular_function

KEGG:

id description
K17658 TEFM; transcription elongation factor, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013387 True 1883 mRNA 0.58 4 30165054 30167818

Neighbor

gene id symbol gene type direction distance location
AMCG00013377 NA coding upstream 103501 30046238 ~ 30061553 (+)
AMCG00013380 NA coding upstream 119554 30033411 ~ 30045500 (+)
AMCG00013381 LOC106564907 coding upstream 140800 30016223 ~ 30024254 (+)
AMCG00013378 NA coding upstream 149590 30011468 ~ 30015464 (+)
AMCG00013383 LOC108432077,LOC105013158 coding upstream 154360 30003896 ~ 30010694 (+)
AMCG00013397 NA coding downstream 19022 30186840 ~ 30194163 (+)
AMCG00013398 NA coding downstream 40255 30208073 ~ 30217024 (+)
AMCG00013394 NA coding downstream 88465 30256283 ~ 30263941 (+)
AMCG00013395 NA coding downstream 111373 30279191 ~ 30283556 (+)
AMCG00013400 LOC108248236 coding downstream 135002 30302820 ~ 30310791 (+)
G43895 NA non-coding upstream 718356 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 962333 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 986788 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1006561 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 1013720 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 287854 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 566718 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 568991 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 604563 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 606364 30774182 ~ 30774548 (+)
AMCG00013388 NA other upstream 74937 30083644 ~ 30090117 (+)
AMCG00013382 NA other upstream 90306 30063380 ~ 30074748 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 236357 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 498003 29640623 ~ 29667051 (+)
G43802 NA other upstream 1060477 29104289 ~ 29104577 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 51092 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 171984 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 257189 30425007 ~ 30430649 (+)
AMCG00013416 alyref,LOC106606979 other downstream 323009 30490827 ~ 30496613 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 395422 30563240 ~ 30568219 (+)

Expression


Co-expression Network