AMCG00013389 (rhbdl3)


Basic Information

Item Value
gene id AMCG00013389
gene name rhbdl3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30091862 ~ 30100704 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013389
ATGGACTCGGGGGGAGGTCAGTTGGCCAGGGAGAAGCTGCTGGAATTCGACCCAGAGAACTCGGGCTATATCAGCACAGAGCGGTTCCGCGGCCTGCTGGAGACCCACGGCGCCGAGCTCGACCCGCACAAGCTGGCAGTGCTGCTGGCGCTGGCGGACAGCAACGCCGACGGCAAGATCAGCTACCAGGACTTCGTCAACTTGATGAGCAACAAGCGCTCGAACAGTTTCCGGCGCGCAATACTGCATGGTGGGCGGGCAATGGCGGGCGGCGCCCTGGGCAAGGAGGTGGGGCTCAGCCCGGCCCAGCGGCTGGTCCGGCACGTGGCCCACGAGACGCTGCCCCGCGAGATCGACCGCAAGTGGTACTACGATAGCTACACCTGCTGCCCCCCGCCCTGGCTCATCCTCGTGGCGGTGTTCGTGTACTACGGGTTGCTGCTGGACCGCTGGGTGCTGCAGGTGTCCCACCCGCTGTTCATGAAGGGGCCCCTGGTGTACCACCCCCAGCTGCGGGCGCAGGCCTGGCGCTACCTGAGCTACGTGTTCATGCACGCAGGGCTCCCTGGCCGTGTCGGTGGCTGACATGACGGCGCCCGTGGTGGGATCGTCCGGAGGAGTCTACGCCCTCGTCTCTGCACATCTGGCCAACGTCGTCATGAATTGGTCGGGGATGAAGTGCCAGTTCAAGGTGTTTCGCATGGCCATGGCGCTGGTGTGGATGAGCGTGGAGTTCGGCCGGGCCGTATGGCTGCGCTTCTACCCGCCCGCCTTCCCGCCCTGCCCCAACCCCAGCTTCGTGGCGCACCTGGGCGGGGTGGTGGTGGGCGTGACGCTGGGCGTGGTCGTGCTGCGCAACTTCGAGCAGCGACTGCAGGACCAGTCGCTCTTCTGGATCTTCCTGTTCGTCTGCGGTGTCTTCGTCCTCTTTGCCGTCCTCTGGAACGTCTTTGCCTACAGCCTGCTGGACCCCAGGCTCCCCCCACCGCcctgagagagagcagagccgtggggagagggggaaggaagGTACGCGAGGGGAGagtggaggaagagagagagcgagagagagagggaaggaggtgGGGTGAGAAGGGGGACAGAGGTGATGATCCTTctcaccccctcctcctctccgcCCTCCGACTCCAACGTTGTGAGGAAAACGCACTGAAGCTCACTGCCTCCTTGTGAAAACTCTCCAGGACCGACCCCTCACACCCCTCACAGAGGTCCAGCACACCTGGAGGCTCCGCCTCCTGTCACAGGTACCTCACCTGGCCATGGGAGTCCGCTTCTGCAACACGGCGGGACGAGAAATCCACGGTTACCCTGCAGTGTGGGTGTTGGGACCACGTGGAGTTTTGATTGgatatctatttttaaagagCAGAGTAACTGTCTATTTTATCTCTGTATAATGGGCCCAGTCGCCCTGCGCGGCTACAGTCCAACCAAGTCCAAACAGTATTCAAAGCTACCCTCTCGCTTCTCTCGTCTCGCTCAGTATTTGTGCAGCATGACCTTATCACACCGTCATTTTGTCAgctttagctttttatttttgtttttccctgctTGTTTTGGGTTGggaagtgggggggtggggaagcCTTATATGAATGCAGACCTCAGATGAACACTTCTGTACATGAAAGTGCCAAACCTCAGCAGGGCACAGGATAAAACTCCACAAAGTGTGTGTTTGCGCATGTGTGTCTGCGAGGGAATGAGAGAAGCATGTGCTATTCTTGTGTCCAATGATATcatattcaggtttttttttattcttttatgcTGTCTTACCTCCCAGACCATTGCAATGAATGCCAAAAATGTGTCGGGCTGCATTATTGTCCACAAGGCCTCTGGGACTTTATCGTTTCACGCACTtctcaaagtgttttttcatttttgtttgtcatGCGCAGttgagcagtgtgtgtgtgtttgttttgaagaaggTGCAGTTGTCAATCTTTTCTCCAGCAGCAgttccaaccccccccccacagcacagCTCTTATCAAGGCTGATTCATGACTCGAACCCATGTCTCACACTTAGCCAGCTTGTTGCTGAGGACAAACCCCCAGATTATTATTTGGTGGCTGTCAAACAGATCAGTTTCCTTCGTAGACGTCCCCTTGTCTGGTGGCATGTCACTCGTGTTGCAATAGAACGCACCACAGAGCTGAACTGGTGGCTGCACTATGAGGTCCCTTGGATGGTGCAGCTCTGCCTTGAGGTCTCGCTCTGCTATCATAGCAATGCATCGCACTACCGCACCCAGGAAGTATGGTCTTCATGTTTTCATGTAACTGAAGTGGCCCACTGTTTTCACATCAGCTTACTGCCAGCAGAATCACTGAATAAAAGCATTcgtcataataatacaattcaatctTGAATAACTTGAAGATGTTTTGTAACTTGGGACTATCTGCTAATATACACAAAGGGCTACGACGCTGCACCTACTCTCTGGAGACTGAcaacattgtttctt

Function

symbol description
rhbdl3 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including basal plate midbrain region; hatching gland; midbrain neural keel; nervous system; and presumptive diencephalon. Orthologous to human RHBDL3 (rhomboid like 3).

NR:

description
PREDICTED: rhomboid-related protein 3 isoform X1

GO: NA

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013389 True 2509 mRNA 0.56 7 30091862 30100704

Neighbor

gene id symbol gene type direction distance location
AMCG00013385 NA coding downstream 88980 29991300 ~ 30002882 (-)
AMCG00013376 LOC107081327 coding downstream 156692 29931650 ~ 29935170 (-)
AMCG00013372 psmd12 coding downstream 288619 29796583 ~ 29803243 (-)
AMCG00013373 LOC106564877 coding downstream 297736 29746227 ~ 29794126 (-)
AMCG00013361 NA coding downstream 642381 29445941 ~ 29449481 (-)
AMCG00013391 NA coding upstream 17096 30117800 ~ 30126501 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding upstream 25993 30126697 ~ 30153358 (-)
AMCG00013392 NA coding upstream 54558 30155262 ~ 30164478 (-)
AMCG00013404 NA coding upstream 221561 30322265 ~ 30332700 (-)
AMCG00013403 NA coding upstream 232744 30333448 ~ 30340461 (-)
G44086 NA non-coding downstream 1715 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 592289 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 970543 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 973901 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1353089 28737957 ~ 28738773 (-)
G44230 NA non-coding upstream 206322 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 283982 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 433267 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 439609 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 450685 30551389 ~ 30552050 (-)
AMCG00013386 NA other downstream 8421 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 30228 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 63632 29926383 ~ 30028230 (-)
G43869 NA other downstream 837546 29253396 ~ 29254316 (-)
G43684 NA other downstream 1623956 28467312 ~ 28467906 (-)
AMCG00013390 NA other upstream 65113 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 185938 30286642 ~ 30290867 (-)
G44243 NA other upstream 299183 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 355023 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 367926 30468630 ~ 30482326 (-)

Expression


Co-expression Network