AMCG00013390


Basic Information

Item Value
gene id AMCG00013390
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30165817 ~ 30184424 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013390
ATGGCGGGGGTGGCAGCCATGGCCTCTGTCATTGAAGACTTCGAGACGCCTCCAAGCAAGAAACCAAGGAAGGAAGGCGAGGTGCCGGCGGTGAAGACCATCACCAACTACTTCCTGCCCATGTCCAAGCTGGCGGACAGGCCCTTCTCCCCGCCCAAGTCCAACAACATCATGGACTACTTCAGGAAGACGCCGCCGGCCGCAGAGCGGAGTGGGGGGCCCCCAGATCCCACCAAGGAGAACCGGCAGCGGCCCCCGGAGGAGGCCAGTGGGAGGGAGACGCCTTCGAGGAGCGCAGGGAATGGTGGCAAGGCTCGGTGTCTGCGGAGGGGCAGGAAGCCGGGCCGGCGCGTTGGCCTTAGCAAGCAGCTGAACGACACCCCTTCGGAGCCAGGGACGGACCCGGACCTGGCGCCAGCGGGTTCGGACCTGGGTGCGGATGGCTCCGGTGAGGAGGTGCGGATCGGGGacggtggtgggggggtgctgggtAGCGACACGGCCGCGCTGCTGGCTCTGGTCACTGCAGACGCCTGCGCTGTGGAGGAGGAGGCCTGCGAGGAGGAGCGCTGTGGGACCCCCGAGACGGATGCCGGGGGCCAGGTGGGCAAGAGGAGTAGCTCTGTGAAGCAGCTGATTGATGCCCCTGACCGGACATCGCAGCCGCAGGCCACAGAGACgcaggaagggaagggaaggaagGGCAGGACCGACGCCAAGACCAGCAAGGCGGCCACATCCGGTGAGCGGCTGCACCGGCCTGCCCCCGATAGCCTGGAGTCACAGCCGCAGCTCCCCCTGTCCAGCGACGGCCTGGAGGGGATGGCGGACGAGGAGTCTCGGCTCAACGACAGCACGGTCACCATCTCCTTCGAGGACTTCCTGCAGAGCcagaagggggagggggagatcAGCGTAGTGGAGGTGTGCGCGCCGGTCGGTGCCGGAGTGGAGGCTGTAGCCGCCGGCGACAGTGGCGATGCCGAAGGCTGGGCGGTGGACGAGCCCAGCCCCTCGCAACATGTCTCGCCCCGCACCCTCACCGTACAGGCAGAGGTGCACTCGGCCGCTCTGGGGAGTCGCTCTGCCGTGCCGCAGCGCAGGGTGGCCTCCATCTTCAACAGGAGGAAGGAGGAGCCAGAGAGCGGCCAGCCCACAGGCTCCCCCCCGGCACCCGAGGGAACCGCCCCGGCCCAGTCCCAGCCCGCCCTGCCTGTGTCGGCGCCCAAGCGCAGGTCCAAcgtggtggtggaggaggaggagctggagctggctgTCCTCGAGTCCTCCAGGCCCCGGTGCTCCCAGGCGGAGAGGCAGCAGTTCATGAGCGCCTTCAGGCAGCCCGGCGGGGAGGCCGGGAGGGGCCAGGGCCGCAGGGGGCCGGGGAGGCCGAGGGAGCCGGGCCAGGAGAGCCCAGCGCTGGCCGAAGAGGAGGAGCCCGAGGCTGAGACCAAAATGGTGGGCGGGGAAAGCAGGCAGGCTattgatgctgctgctgccacccACGATGCTACCACCAGCACTGCCACCCTCCTGATGGAGGACAGCAGCAAGGAGGCAGGCCAGGgcggtgtggggggggtggcgaAGACCCAGAGAGGAGGTGGCCggctgaggaggagggggaagagGAAAGCGGCCGTGGCAGAGCAGGGCACCGCAGGCGCCACTCCCCAGGgaggtggagagggggaggaaaagGAGGGGGAAGCAGATGGTTCTGGATGTATTTCTGGTTCTGGTCCCACCCCAGTGGCCCCCGAGACCCCGGCCAGCACCAGGCTCACCAGGGGCCGTACCCGTGGGCTGCCCTCCCCCGCCACCCCCCTCaactccccccccccgccccagaCCCGCAGCCGCGAGCAGAGAGCCAAAGCCCCCCAGGTCAGCAACAGCCCGGCTCAGTTCTCCACCCCCAAGGCCCGGGCCCCCAACAGCAGGGTGTACAAGATGAAGTTCACGCGGGTCTTCCCTCGCTCCCGGAGGAGGCCGGTGGAGGGCCGGGACGGTGAAGCTGCATCACAGGGCACCCAGaATCCCGCTGCATTGAAGAGCAGCAGGACGGCCAAGAGTCTGGTGAAGAAGGCCCGTGCCCTGCAGAGGAGCAAGACCAGGCTGGAGGAGGGCAAGGGGGTGCTGCGACGCTCTGCCAGGATCCCCGACGTGCCCAGGAGAGCGACCTACTGCGAGGACGAGgactctgtggtgtgtgtggaCGACGAGGCACAGGCCAGCGGGATGGACAGGCGGACTCGGATGCGCAGCCTGAACGAGGTGCTGGGGAAGAACGCAGCGGCCAGCAAGGCGGCCAAGACCCCCGCAGGGACGAAAGTAGCAGCTCTGTTCCTCGGCAAAAAGGGCCCGAAGCCGTCGGGGGTCATCTCCATTTTCGACGATAGCAGCCAGGACGGGTCGGAGGCCTCGCAGGACGATGAGCAGGTCCGGGCCCGGCGTGAGTTCTTGCGCAGCGGCCTGCCCGAGTCCTTCAAGAAGCAGATCGCCAAGGTGGCCGCCTGCCAGGAGGCCTACGCCGCGTCCTGCTCCTCCTTCCAGGCGGTCGTCCACGTCCGGCAGAGCGTGGCAGAGTGCCCCCTCTGGACTCTGCCCTGGCCCGACTCCGTGCTCCTGAAGCATCTGAAGGGAGGCTGTGAGGCCCCGTCCAGGATGGCTCTTTCTGTGGGACCGCTCACCGAGGTCCACACCAAGCCCAGTGTGAGAGCGTGTGTAGCCCAGGGGTCTGGCTGGAGGCAGGATCTCTCCGAAGAGGTGCGCCGGTGTCTGCTGGAGGAGGTCAGGGCCTCGAACCCTCCCTTCCCGGTCAGACGCTTCTTTAACTGGTTCCTGAAGAGACGCAGCGAGAATCTGTCACCAGGGGGTGCCGCTGCTGCagGGGGAAAACGGGAGCGCGAGGAGGACAgggggcagggcagggggggCCGCGTGTCCAAGAGGCGGCGGGGGGCCCAGACCACCATCGTGATCGAGGACGACGCAGAGGCCGGGTCTGCGCTGTTGGCCCAGGGGTCCGGTTCGGCCGAGGAGCCCAGCGGGAAGGGCAGCTTGAGCCGGCCGTGCAGGGGCAGACCGGGCAGAGATGCCCCCGCCCTTCACACCCCTGTGCAGGACTGCCAAACCATCCTGCTGGACGACAGCCCCTCCCCAGGACCCCCCAGGGCAGATGGTGACGCTGGCCGCGAGGACGTGCTGTGGACGGAGAAGTTCCAGCCACAGCACTCCAGTGAGGTGCTGGGGAACTCCGGCGCAGTGAGGCGGCTGCACAGCTGGCTGAAGGAGTGGAAACAGAGGGCCGACCGTGAGGAGAGGAGGAATCGGACAGACAAGAAACCGGAAGAGGACAGTGTCGACTCGTGGGACTGCGGAGACTTCCGGGAGGACGACGAGGACGGGGAAGAGCAGCTGTGCAATACTGTGCTGCTCACCGGCCCCCCCGGCGTGGGCAAGACCGCCGCCGTGTACGCCTGCGCCCAGGAGCTGGGCTTCAAGGTGTTCGAGGTGAACGCGTCATCGCAGCGCAGTGGCCGGCAGATCCTGTCCCAGCTGAAGGAGGCCACCCAGTCACACCAGGTGGACGTCGGGGGCCCCAACGCACACAAGCCCTCCTACTTCAACAGCCACAGCTGCGTCAAGAGCAGCTCCTCTCCACGGAAGACAAATTCTCCTCGGAGGGTCACTGCCTCTCCCAGGAAGCCCCCCCAGTCTCCTCGGGGTGCCAAGAGGGGCAGCCTGGCCCCCACCGCCCTCGCCAACTTCTTCAAGCTCAGCGGCCGACGGAAGGGCGGAGAGAAGGACGAGCCTCCAGAGAAAGGTGAGGCCGTCGATGTAATATTCGACGATGACTGGGGGTTCCTGGCAGCGATCAAGACCTTCATGGCGACCACCAAGCGGCCCGTGGTGCTGACCACCAGTGaCCCGACGTTCAGCATGATGTTCAGCGGCAGCTTTGAGGAAATCCATTTCAAAACTCCTTCAGTGGTGAACGTTGCCAGCTACCTGCAGCTCCTCTGCCTGGCGGAGAACGTGCGGACGGACGCGCGGGACCTGCGCTCGCTGCTGCACCTGACCGGCTGTGACATCCGGCGCAGcctcctgcagctgcagctctgGACGCGCAGTGGGGGGGGGCGCGCTGTGCACCGGCCCCTCATCACCCTGACCGGTATCCGCGCCCAAGGGGGGAGCCGTGGGGTGCGCAGAGGAGGCCGAGACGCAGATGACCACCACCATCCCCCCCGCCAGCCTGCCGCCCTTCGGGGGGAGGAGCTGGTGGAGGAGTGCCGGCGCCGGCGGGTGGACCTGCTGTACAGCaacctggaggagctgctgcccCTGCCTGTCAGGCCCCTCGCCGGGCCCGTGGACACACCGTGCGTTGAGCCCAAGGCCCCAGAGACGGCTGACGCAAAGCCCCCCGCACCCCGCCCCCTGGAGGGAGCCAGCACCCCCGAGGGAGccccacacagcacacagaggagAAGGGGTAGGAGGAAGATGGAGATGCTGCAGTTCGCAGACAGAGACCTGTTCCAGTCGGACTCCGACTCAGACTCGGGCTTCCTGACGCTGCGGACAACGGAGGCCGAATGTGACACGACTGGTGCCGCCTCAGAGACACGGGAGAGCACTGCCTTGGCCCCGGCTGCCACCACCAGCATCCAATCAGAAGACAGCAACAGGAGGGTGGTGGGGTCTTGGGGGCCAGAGGAGGCAAGACAGGGGCCCCTCAACCAAAAGCCATCTACCCAGACAGGTGTCAAACTGGTACCCTGGGAGGGCGGGCGGCTGGTGTCCCGCTGCCTGGGATCCCTGGCAGACTTCCTGGACAACATGTCCTTCCTGGACTCATCCCTGCACTGCGAGGAGTGGCCAGCTGAGGGGCTGTGCTGGCGGGGGGGTGCGGAggggctgggctgggggggggcagaggtGAAGAGCGGCCTGTCGGATGAGGCCAGGGTGGAGCGGGCGGGGGCTGAGGACGGGGCGGCCCGGGACATGCAGGCGGCCGTGGAGAGCCTGAGTTTCCGGAGGTGCCGGGCGGCCGTGTCTGAGGCCTGGCAGGAGGCCCGGCAGCTGAGCGGAGAGCCAGGCCTGCAGACCATCGAGGAGCTGAGCCTTCCTGTGGCCCCCCACCGGCAGGGCTTCAGCTATGGTCAGAGGGACCCCTGCGACCCCAGCATGCTGCGGCGGCGGCGCGAGGTGCTGCAGTCGGTTGTCTCCAGCAAAGGCCTGGTCTCTGTGGGCAACCGGCAGGCCGCCGCCCTGGACTACCTCCCCGCCCTGCGCTCCATCTGCCGCGCCGAGAAGACGAAGGAGAGAGGCAGACTAAAGAGGAGGTTCCTGCACTACCTGGATGGCGTTCACCTGAGCCTGCCCAAGGGTGCCCTGGAAACGCTGGCGGCCGACTTCCCTTAG
>TU55007
GGGGCTGAGGACGGGGCGGCCCGGGACATGCAGGCGGCCGTGGAGAGCCTGAGTTTCCGGAGGTGCCGGGCGGCCGTGTCTGAGGCCTGGCAGGAGGCCCGGCAGCTGAGCGGAGAGCCAGGCCTGCAGACCATCGAGGAGCTGAGCCTTCCTGTGGCCCCCCACCGGCAGGGCTTCAGCTATGGTCAGAGGGACCCCTGCGACCCCAGCATGCTGCGGCGGCGGCGCGAGGTGCTGCAGTCGGTTGTCTCCAGCAAAGGCCTGGTCTCTGTGGGCAACCGGCAGGCCGCCGCCCTGGACTACCTCCCCGCCCTGCGCTCCATCTGCCGCGCCGAGAAGACGAAGGAGAGAGGCAGACTAAAGAGGAGGTTCCTGCACTACCTGGATGGCGTTCACCTGAGCCTGCCCAAGGGTGCCCTGGAAACGCTGGCGGCCGACTTCCCTTAGCGTGTTCGCCGGAGCGTCTGCCCAGCAGCTGCCCTTGTGCTTCCCCAGGCTGCGTCAAGCTCTTGTACAGTAATATAACGCACACTGAAAGTGCCAGTGATTTCattttggattattttattatataaatgtatgttggTGTCTGTTTTTAATGGTAGCTGTCGACAAACCTGGGCTATGATTCAGGAGTGCGAGggtctactttttttttttttttttttaaaaagatgttttatataaagaaataaatgttgtttgacagcaaaaacatttctataaagtcacatgtacatttttttttattaaacctaTGAAAGTTTaacattagaaaaaataaaatggatctTGTTTCTGTGGGAGACAAATACAGTGTGTAGAAATTGTGTAGAGGACTCTGGGAGGGGGGCAGCAGACCACACTGTCCAGTGGGGCACCCCCACCACCGCGCAGTGTGGCCCGACCCTGGGGCTCTGTTATCTGGGTACCTTTTCAAGAGCAGCTGTTGATTTAATACATAAGAACAACATTTCAAAAGACGTGTTGGTACAATAACTGCAACCTCCGGCCTCGGTTCTTAATTAAACCGGTTCGTTGAGGGCCAGTGGCACATGTGCTGTGAGGGCATGTCTTATTTATCGGACAAAAATGATACGGCAGGGACTGGGTAATTGAGTCGAACACCCACACTGGCATAACCAGCTGTGTCTCTGTTGGGTGCGGTGACGGTCTGGGTGCCACGCTGTCAATCCGGTCTAGCTGTCACTCAGCAGCTCATAGAAGGCCAGGGCCTGCAGCACTGCATCACACATCTCCTCCCCCTGGTTCCAGCTGTGCGGGCGGAAGGCGTTCCTGTACCGCACCAccagggtgggggggaaggcCAGGCGGGGGCCACTGCGCCCCACCGAGTCTGTCATCAGCTGCTGCACCAGCTGGGCGCCGCTGGTCCTCGAGTCGCCCACGATGAGGCCGAAGTGCCGCCCCACCGCCATGCGCATCATGTTCAGGACCCTGGGCACCCCCCCACTGTCCCCGGCCCGCCCCGCCAGCAGCGCAAACAACATCGCCTCCACCGTACGCATGTGCACCGTCACCGGGAACAGCGTGGCGCTCTGCAGGGACATCCCCGGCTTCTCCACCACGTAGAAGTCCGCCTCCGGCATCCGGTCAACCACCGCGCCGACCTGCAACGGCCAGGACACATGACAGAAGGAACACACAAGTGAAGTAGTTTGAAGGGAGGTGACTGGTGGCATCACTAATACAAGAGGGGTACAGAGTGGCTGTAGGGCATCACACTCACGTCCTCCAGGTACGAGGAGGCCAGGTAGGTGCCCTTCATGAAGTGCTGGCACTCCTCCTGCTGCCAGTCCTGCACGCAGGGGCTGCGGTCCACGTGAGCCCAGGCGATCCTGCTGGTGCCACACACGATGGACACGATGCTGCTGGCTTCCTGCGGCACAGAGGGTCACAATAAAGCCACACACCAACGGCAGGAGGGCCGTTCCCATTCTAGGTTACATTCTCATGGTGCAACAccgatttattaaaatatttattcatttctatCAATTTGAAGATATTAGTTTTAAACCACGCATGCCTGTTTCCCAGACTGCAGTTGGGTGCCACTGCTCTACAGTAGTCAACCCGGAGCagcatgaatgaatgaatgaatgacaatGAGACCAGGCTCTGGCACCTGCAGTGTCTTCCACTCCAACTCCGGCTTGACGAACTTGGCGGTCCGCAGCGGCTGGGCCTTGGGCTGCCTCTTCTCCTCGGGGTGCAGGATGGAGTGGAACACCACAGCGGCCGTCTTGTGCTTCAGCAGCGGCACGTTGACCACGCTCTCCAGGTCAGGGAACGGCCCGTGCCGTGCCCGGTACTCCATGATGTTGGCGGACTTCCTGCCACGCAGCAGCTTCACACCGGCCAGCTGGCTCTCAGGGGCATGGTTGAGCACCTGCAGGATGGCCGTCCGCTGCGCCTCTGTGTAGCAGGAGTCCAGCGAGGGCTGAGCCCCGCCGCTCCGCTCTGGGCTGTGGCTTCTCCGGCAGCAGGTGCAGTGCAGGAAGCGCGGTGGCAGCTTTGGTGGGGTGGCCATGGGGCTGCGGAACAAGCCATGCCACCCTGCAGtgggggagggaaagagagaaagagt
>TU55012
CAgggggcagggcagggggggCCGCGTGTCCAAGAGGCGGCGGGGGGCCCAGACCACCATCGTGATCGAGGACGACGCAGAGGCCGGGTCTGCGCTGTTGGCCCAGGGGTCCGGTTCGGCCGAGGAGCCCAGCGGGAAGGGCAGCTTGAGCCGGCCGTGCAGGGGCAGACCGGGCAGAGATGCCCCCGCCCTTCACACCCCTGTGCAGGACTGCCAAACCATCCTGCTGGACGACAGCCCCTCCCCAGGACCCCCCAGGGCAGATGGTGACGCTGGCCGCGAGGACGTGCTGTGGACGGAGAAGTTCCAGCCACAGCACTCCAGTGAGGTGCTGGGGAACTCCGGCGCAGTGAGGCGGCTGCACAGCTGGCTGAAGGAGTGGAAACAGAGGGCCGACCGTGAGGAGAGGAGGAATCGGACAGACAAGAAACCGGAAGAGGACAGTGTCGACTCGTGGGACTGCGGAGACTTCCGGGAGGACGACGAGGACGGGGAAGAGCAGCTGTGCAATACTGTGCTGCTCACCGGCCCCCCCGGCGTGGGCAAGACCGCCGCCGTGTACGCCTGCGCCCAGGAGCTGGGCTTCAAGGTGTTCGAGGTGAACGCGTCATCGCAGCGCAGTGGCCGGCAGATCCTGTCCCAGCTGAAGGAGGCCACCCAGTCACACCAGGTGGACGTCGGGGGCCCCAACGCACACAAGCCCTCCTACTTCAACAGCCACAGCTGCGTCAAGAGCAGCTCCTCTCCACGGAAGACAAATTCTCCTCGGAGGGTCACTGCCTCTCCCAGGAAGCCCCCCCAGTCTCCTCGGGGTGCCAAGAGGGGCAGCCTGGCCCCCACCGCCCTCGCCAACTTCTTCAAGCTCAGCGGCCGACGGAAGGGCGGAGAGAAGGACGAGCCTCCAGAGAAAGAGACCCATCCCCGGAAGCCACCCAAAGTGAAGGACAGGA

Function

GO:

id name namespace
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013390 True 5439 mRNA 0.68 21 30167981 30184424
TU55007 False 2611 TUCP 0.58 3 30165817 30169136
TU55012 False 950 lncRNA 0.67 6 30173492 30175306

Neighbor

gene id symbol gene type direction distance location
AMCG00013392 NA coding downstream 1339 30155262 ~ 30164478 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding downstream 12459 30126697 ~ 30153358 (-)
AMCG00013391 NA coding downstream 39316 30117800 ~ 30126501 (-)
AMCG00013389 rhbdl3 coding downstream 65113 30091862 ~ 30100704 (-)
AMCG00013385 NA coding downstream 162935 29991300 ~ 30002882 (-)
AMCG00013404 NA coding upstream 137841 30322265 ~ 30332700 (-)
AMCG00013403 NA coding upstream 149024 30333448 ~ 30340461 (-)
AMCG00013410 NA coding upstream 246240 30430664 ~ 30436741 (-)
AMCG00013419 NA coding upstream 323527 30507951 ~ 30521671 (-)
AMCG00013420 NA coding upstream 339483 30523907 ~ 30533879 (-)
G44086 NA non-coding downstream 75670 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 666244 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1044498 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 1047856 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1427044 28737957 ~ 28738773 (-)
G44230 NA non-coding upstream 122602 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 200262 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 349547 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 355889 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 366965 30551389 ~ 30552050 (-)
AMCG00013386 NA other downstream 82376 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 104183 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 137587 29926383 ~ 30028230 (-)
G43869 NA other downstream 911501 29253396 ~ 29254316 (-)
G43684 NA other downstream 1697911 28467312 ~ 28467906 (-)
AMCG00013405 NA other upstream 102218 30286642 ~ 30290867 (-)
G44243 NA other upstream 215463 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 271303 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 284206 30468630 ~ 30482326 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other upstream 298881 30483305 ~ 30486331 (-)

Expression


Co-expression Network