AMCG00013393 (rhot1a,LOC108430568,LOC107729179)


Basic Information

Item Value
gene id AMCG00013393
gene name rhot1a,LOC108430568,LOC107729179
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30126697 ~ 30153358 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013393
ATGGCGCTGGACCCGGCCAGGCTGGACTCTGTTACGGGAGAACTGCAGTGCCCGATCTGCTGGGAGACCTTCCGAGACCCGGTGCGGGCCTCCTGCGGGACTCATTACTTCTGCCTGGATTGCATGCACAAGTTTACAGAAGCGAAGAAGTtcaactgctgctgctgtatgGGCCCCTACAACCCGCAGCACCGGCTGGAGGAGACCCTGCAGCGCAGCTTGGCGGAGGTGACGTCGAAGATCAGGACAGAGTCCGCCTCGTGGGAGAAGGACACCATGCGCTGGCAGTTTGGCGAACTGAAGAGGCTGATCGAGGAGAAGGAGAGCGCGGCCCTGTGCGTCCTGAGCCACAGAGAGAGTGCTGCCCAGCAGAGGTCCGACCACGTCCTGACGCGCCTCGGCCGGAGGCTGGACTCGCTGAGGTGCGTCAAGTCCCGGCTGGAGCAGGCGAACCCCGGCAACTGCTCCGCCCTGCTGCAGAGTGTTGGTTTCCGACCACCAGGACCCACAGCCCAGACCCCGCCCGAGGAGATGGAGTGCTCCACTATCCAGGAGCCTGAGAGACCCGCCAATCTGATGCAGTGTTTGGTGCGTCTGTCCTTTAGCCTGGAGCGTGCACACCCGTTCCTGACCTTCTCAGAGGATTTCCGGCGTGTGAGGGTGCGCAAACGCAGCAGGACGTCACCCTGCAAGAACAACTGCTTCAAGACCACCCAGGCCATGGCGGCGCAGGTGTTCTCCCAGGGCGAGCACTACTGGGAGGTGGACACGGCCAGCTGCGTGGCCTGGGCAGTCGGGGTGGCCTATTGCAACCTGGGCCTGGGGGTGACGGTGGGCCGGGACTCCAGGTCCTGGTGCCTGGAGGGGAACACGTCCCAACTGTCTGCCTGGCACGCCAACAAGGAGGTCCTGCTGAGCCGGTCCAAGCCCGGACGGGTCGGGGTTCACCTGCgcatgggggagggggagctgtCCTTCTACTGCATGCCTGGGGCGGAGGAGCCACTGTGGACGTACCAGGCCTGCTTCACCGAGGCGCTGCAGCCCCAGCAGCAATTCTGTCCCTTCGAGGATGCCGTCGACGTCGCTTGGCGTAGGTCAGCCGGAGGAGGCGTGCGCCGGTCGCATCTCCCGCACAATGTCAGGCAGTCGGGGAGCAGCGCAGTAAAACGGCGTAAAAAACCCCACGGTGTTCTGAGTGACAATGTCGCCGCTCGCCACGCCGATAGCTGCCCCGCTGATTTGCGCAGCGAGCGACGCGCGGGGGTCCGGTGGTGCATCGACGGCCTCGCCGCGTCCGGTTTGTCCTACAGCGCGCGCGCGCCGACGCGGACGGGCGGACAGGCCTCGCGCCGCACCGGCACCTCGCGAGCACCGGCAGCGGCTCCGGTCCGCCTCGAGGCCCAGGCCATGCGGAAGGACGTGCGGATCCTGCTGGTGGGGGAGCcCAAAGTGGGGAAGACTTCCCTGATCATGTCCCTGGTCAGCGAGGAATTCCCCGATGAGGTCCCCATGCGTGCCGAGGAGATCACCATCCCAGCAGACGTGACTCCGGAAAGGGTCCCCACGCACATAGTGGACTACTCGGAAGCGGAGCAGTCAGACGAGCAGCTGTACCAAGAGATCTCGAAGgCGAATGTGATCTGCATCGTGTATTCAGTCAACAATAAGAACTCCATTGAGCAGGTGACGAGCCGGTGGATTCCTCTGATCAACGACCGGATGGACAAGGACAGCCGAGTGCCGCTCATCCTGGTGGGCAACAAGTCCGACCTGGTGGAGCACAGCAGCATGGAGACCATCCTGCCCATCATGAACCAGTACACCGAGATCGAGACCTGCGTGGAGTGTTCGGCAAAAAACCTGAAGAACATCTCAGAGCTGTTCTACTATGCACAGAAGGCGGTGCTACACCCCACTGGGCCCCTGTACTGCCCAGAGGAGAAGGAGATGAAGCCTGCCTGTGTTAAAGCCCTGACTCGTATTTTCAAAGTGACAGACCTGGACAACGACGGCATTCTCAACGATGCCGAGCTCAACTTCTTCCAGAGGACCTGCTTCAACACCCCACTGGCCCCGCAGGCCCTGGAGGACGTAAAGAACGTGGTGCGGAAAAACATGAGCGACGGCGTACACGACAACGGCCTGACTCTCAAGGGCTTCCTGTTCCTGCACACGTTGTTCATTCAGAGGGGGCGGCACGAGACCACGTGGACGGTGCTGCGCCGCTTCGGCTACGACGATGACCTGGAGCTGACGCAGGATTACCTGTTCCCCCCGGATTGCGCTCTGTCCCCCGATGAGCTGAAGGACCTGTTCAAAGTCTTCCCCTACATGCCCTGGGGTCCCGACGTCAACAACACCGTCTGCACCAACGACCATGGCTGGATCACCTACCAGGGATACCTGTCGCAGTGGACGCTGACAACATACCTGGATGTGCAGCGGTGTCTGGAGTACCTGGGCTACCTGGGATACTCCATCATCTCCGAGCAGGAGTCCCAGGCCGCTGCCATCACAGTGACCCGTGATAAGAAGATCGACCTGCAGAAGAAGCAGACCCAGAGGAACGTGTTCAGGTGTAACGTCATCGGAATGAAGGGCTGTGGAAAGAGCGGCTTCCTGCAGGCCTTCCTGGGCCGCAACCTTATGAGACAGCGGCAGCTCCGGGAGGATCACCGCTCTTTCTATGCCATCAGCACCACCTACGTGTACGGCCAGGAGAAGTACCTGCTGCTGCACGAGGTGTTCACTGAGTCCGAGCTGCTCTCCGAGGCCGACCTGTCGGACGCTGACCTGGCCTGTGACGTGGTCTGCCTGGTGTACGACTCCAGCAACACCCGCTCCTTCGAGTTCTGCGCCAAGGTCTTCAAGCAACACTTCATGGACAGCAAGACCCCCTGCATGATCGTGGCGGCCAAGTCAGACCTGCACGAGGTGAAGCAGCAGTGTAGCGTCTCGCCCCTGGACTTCTGCCGGAAACACAAGATGCCCCCCCCGCAGGCCTTCACCTGCAACACCTTGGAGATCCCCAGCAAGGACATCTACACCAAACTGACCACCATGGCCATGTACCCCCACGCCCGGTTACGCTGTATGTGCGCCTGCAACAGGTGCACGTTTTGCCTCTGTCAGAACCTCCTCAACTCAGACTTGCTGCAATCTGTAAAGACCAAGCTCTACACCGCTGTGCTGCACAGGTTGGAGGAGCTGTGCGCTGCGCTGCTGGCCGGCGAGGAGGAGGGCAGTTTGGGGCAGCAGGTGCACGCGGTGCGCTCCGTGGAGGAGTCCGTCTACATGGGGTCGTCTCTGGACACCTGCGTGCCGTCCCGTCCCCCGCCCCGGCACAGTGTAGGCGTACACTCCCCACACCCCGACCGTCTCACAGTCCGTCTCTGGGGCTTGGGTTTGTTCACAACGACGCACTCCCTGCTCGTGTCTGCTGAGGCGCTCTGTGtttattttttgtgtgagagtgtgagacaGCGAGTGCATGTTCATGTTCCATTCACTTCTGTGTTCAGCTGTGTACCCCTCGGTCCTGTGTGTGGTCCGCGTCTGTCCGAGGAGGCGGTTCTGTATCGGCTGGCCAGGCAGGCAGTGCTCTGTCACACTAATTTGTACCCCAGCCCAGGCTCTTGTCCTGGCATCCCTGCCTGCTTGTCTGCTTGTGAACACATCTGCAGTCAGTGCCGGTGTCCCGCTGCCCACGCAAGCCTGCGCCGCTCTCGCGTGTCCCCCCCGGCTTCATTTATCTTGCGTTTCTTTCTCCCTCACagGCACGTCACCCAGGCGGACCTGAAGAGCTCCACATTCTGGCTGCGGGCGAGTGTGGGGGCCACCGTGTTTGCCGTGCTGGGCTTCGCCATGTACAGAGCACTGCTCAAACAGCGGTGATCTCGCCATGCAGAACCTAGAGTCAGTTTTGATATCTCCATTAAATTAACCcaattatgtgtatataaatatactcaGAGATCGCTTTGGAGTCTGCAAGAACCTCAACTTTTCACtcgtttttatttaaatgcgcAACAGTTCATTCTGGAGTCTCTCATTAACGTTTGTTGTGTTTAACGGGACTTTGGGCTGATATGATTATAGTctgggattatatatatatttaaaacaggaAGAAATGAGAAACCTCCCCTTGTATTGATGGTGGTTTTAGAGGTGCCCCTCTGCTCCAGTCAGGGTGTCCAAACAGGCCCAGTGGGCCCGGAGAGTCTGCACCGGGACACATGGGCCTCCTGGGACTGCAGACCatgtatataatgtacataGCAGCAATCTCATCTGGATTGTCTGGGGAATTAGACTAAACGAATTTAACGAATATTGCTCTCTATACAAAGGTCAAACTCTGAGCGATCATGGGAAGCTGCTGCAGCAAAGCCAGGGTGCTTTATGTTTGTCAGGATTATTATTTTGCGCTGCATctgtatgaaatgtaatttattaggctgtttttgtttagttttatgaCGGTATGTTTGCGTCTCTGCACCTCAAGGCAGAGGACACAAGGATGAGGTGATTATCATTActgctcattattattattattgataataacaataaagtgTATCAGTATTACTGGTTATTAACAGGATGGGTGTTCAGCGGGGGTCGGGCAGTAGGGGGTCCGGCAGCAGGTCTCacgcttttattttttgcaaaacctTGTAACCCCTCTCAGCCGGGGCCCTGAGCTCTGTATTAACGGCCTGGTGAAATGAGCCGGGCGCACAATCTGCATGTCTGGCCGCTGCATCACACGCACGTCTCCTACAGAGGGGGATACTGCAGACattgcactttcttttttttcttactgttATGATTTGTTATTACAgtttaaagaatacaaaatctgTCACAGTTTGTATTAATGATcttcctctcacacacacaccgccaGCCCCCGGACTGTTTTCTCCGTATTGTGACTTGTTTTTTTGCCctcaacatttacaataaataactgTGTGCTGTA

Function

symbol description
rhot1a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including mitochondrial outer membrane permeabilization; mitochondrion transport along microtubule; and regulation of mitochondrion organization. Located in mitochondrion. Is expressed in fin bud; head; muscle; and somite. Orthologous to human RHOT1 (ras homolog family member T1).

NR:

description
mitochondrial Rho GTPase 1-A isoform X1

GO: NA

KEGG:

id description
K07870 RHOT1, ARHT1; mitochondrial Rho GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013393 True 4999 mRNA 0.57 30 30126697 30153358

Neighbor

gene id symbol gene type direction distance location
AMCG00013391 NA coding downstream 196 30117800 ~ 30126501 (-)
AMCG00013389 rhbdl3 coding downstream 25993 30091862 ~ 30100704 (-)
AMCG00013385 NA coding downstream 123815 29991300 ~ 30002882 (-)
AMCG00013376 LOC107081327 coding downstream 191527 29931650 ~ 29935170 (-)
AMCG00013372 psmd12 coding downstream 323454 29796583 ~ 29803243 (-)
AMCG00013392 NA coding upstream 1904 30155262 ~ 30164478 (-)
AMCG00013404 NA coding upstream 168907 30322265 ~ 30332700 (-)
AMCG00013403 NA coding upstream 180090 30333448 ~ 30340461 (-)
AMCG00013410 NA coding upstream 277306 30430664 ~ 30436741 (-)
AMCG00013419 NA coding upstream 354593 30507951 ~ 30521671 (-)
G44086 NA non-coding downstream 36550 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 627124 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1005378 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 1008736 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1387924 28737957 ~ 28738773 (-)
G44230 NA non-coding upstream 153668 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 231328 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 380613 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 386955 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 398031 30551389 ~ 30552050 (-)
AMCG00013386 NA other downstream 43256 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 65063 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 98467 29926383 ~ 30028230 (-)
G43869 NA other downstream 872381 29253396 ~ 29254316 (-)
G43684 NA other downstream 1658791 28467312 ~ 28467906 (-)
AMCG00013390 NA other upstream 12459 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 133284 30286642 ~ 30290867 (-)
G44243 NA other upstream 246529 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 302369 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 315272 30468630 ~ 30482326 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G273482 NA non-coding CI01000069 null 99720 ~ 120649 (-)