AMCG00013394


Basic Information

Item Value
gene id AMCG00013394
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30256283 ~ 30263941 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013394
ctTGCTATAGGAAAATTACCAGCGGAATAAGAGCGCACAGTCCGACCGACTGAAGCGCTTGCCTGTTCGTACGCACAGCGGCTCTGAACCGAGCCGGGATGGAGCTGCCCGCCGCAGGGGAGCACGTCTTTGCAGTGGAGAGCATCGAGAAGAAGCGGGTCCGAAAGgGTAGAGTTGAATACCTGGTCAAGTGGAGAGGCTGGTCTCCGAAATACAACACGTGGGAGCCAGAGGAAAACATCCTGGACCCGAGGCTCCTGGTCGCTTTCCAAAACAGGGAGCGGCAGGAGCAGCTGATGGGGTACCGGAAAAGAGGGCCCAAACCAAAGCACCTGCTGGTACAGCTCCCCGCCTTCGCCCGGCGATCCAGCATCCTCTCCGGGCTGCAGGAGGCATCTCTGGACGACGACAACCGACCCAAGACTGACCAGGTCCAGAGCCACCGGGCCCAGCCCCAGCAGTACCAGCTGAACAGCAAGAAGCACCACCAGTACCTGCCCAACAGCAAGGAGAGCTCGGCCGAGCTGCCGCCCATCAGCAAGAAGAAGTACTACTACCAGCTCAACAGCAAGAAGCACCACCACTACCAGCCCGACCCCAAGATGTACGACCTGCAGTACCAGAGGGCCAAGGAGGCGAAGGGCCCGGCCGCCCCGCCGCACAGCTGGAGCCTGCCCGCCGCCCTGCAGCACAAGTGGGCCCGTGATCGGGACTCAGGCTGCCTGGGCCATGTGAAGGACCTCTCCGTGGAGCTGAAGAAGCTGCCANNNNNNNNNNCCTCGGTGGAGCCGAGTTCAAACGGCGTGGCAGGCAAAGACGGCTCGGCTGGAGGGGTGGCAGCGGCCAGGGGGGCGGTGGAGGCGGCGGTCGGCCACAACGGCATTGGCAGCAAGATGAAAATTgtcaagaacaagaacaagaacggCCGCATCGTGATCGTCATGAGCAAGTACATGGAGAGCAGCCTGCAGCCGTCCAAGGCCAAGAGCAGGGACCCAGACAGCGCCGAGAAGCAGCAGCGATCAGAGCGGCCCGAGCCAGACTGTGCCGAGAACCTCCCGGACAGGACTACAGTTTCCGACGGACGCGCCATGGACAGCATGGCCTCTAAAGACGCTAAAGATCAGCCATGCTGTGCCGCCCCCGCCTCCCCCACACAGACCAATGGGCACTCCCCGACGGCCCCGGCAGGACTGGGAGGAGGGGCTCCGGAGGGGGAGCGGGAGCCGGACGTTGCTGGAGAGAACAAAACGGAGCCTGGGAGCCCGGCAGAGGAAGAGGAGCCGGCGGATGACCAGCCCCTGCAGCTGACCACCAAGCCCAACCTGACCCCCTGGCCCTTCGAGATGGGTGTGCTGTCGCGGCTGGACCAGCGCCGGGCTGTGACGGGCGCCAACATGGCCCACTCCCGCAAGCGCAGCCTCTCCCAGCCCGACCAGGACCGGGGGCCGTGCAAGAGGTTCCTGAGCTCCAGGAGCTTCAGCGCCCCCAGCAGCGCGCCCCCCCCGGGCCAGGACAAGCCCATTGACCTGCACCTCCACCACGGCTACCCCCTCAGCACCGGGCAGCACTACCCCTTCCAGGACTCAAACCCGGAGGAGCCCATAGACTTGAGCTGCGTGAGGCCCCGGGCCGAGGCGGACGCGTGCACACAGGCCGAGCGGGAGGAGCCCCCCCGGGAGCCCGAGCCCGCGCCCCCGGAGGCCGAGGACCCCCTGCCCCACTTCCAGCCCTTCTTGGGGAACATTATCATCACTGACGTTACGGCCAACTGCCTGACCGTCACCTTCAAGGAGTACATCACTGTGTAGCCCGGACGTCACGCACACAGGGCACCACACGGACCGACCGATCTGTGAATCTGTACATTGTGagaagaataacaacaacaatatgacTAATGGTTTATCGTGAGGAGTTCAGTGTCATTGTGACTGAGACACACAGCGGACCCACAGTGGCCTTCACACCCCGGCTCTGGGCTCCTTTACTGGCTCCTCTTCTGGTTTCTGTGCCCCGGCTGTTCGGGACACGGTGCTGTATCTCAGTGTAGGTGGAGTAGGAACATTAAATACATAGTTGATGGCTGTCATCACAAACAAGCACTtacaaactgtgtgtgtgtgtgtgcttatataaacacacacacacacacacatacatatatacatagatataccTAAATCTTTTTATACTTGAAGATTTTTCCGGACTATTTCCATTAAACTCTGGCTTTATAATTTGTCGGGCGTGTTTCTGGGGGAAACGAGAGAACCAGTCAGTTCCAGATCGATGGTCTCGCTGCACACTGTGTCGAGGGGGGGGAGGGCGTACACATGAGCTGCAGCCCTGATCCTGCCGGGTCATGGCTCAGTTTTCCAGGTCTTGCCCCCCCATTAGGAGCACAGTACGAGCTCGGTAaatgtgccccccccccacccctggtcAAACAgcacaaaactaaaacatttctgAGGCATCCTGGACAGGAGTGTGATTtgcactatttttattttttacgttTTGTAGATCAGGGCAGCGGGACCATAATTAATGCTGGCTTTTCTACTGGAGCCTTTTCTTATCCACCCCTCCTGTACAGACAAACCCCTCGTTTACCAGTCCTCCCATTTAGTGCCGACGATACAACACTGTCCAAATTTAGGATTTGGTCGCACCTGTGGGTCACAGCACCTGTGAGCAGGTGAGGGCGGGGGGCTCGGGATTGTTTACAGGGACTTGGGAACCGTTCTCAGATCAGTCTGGCGTCTGCAGCCCGGGATAGCGAGGTGACGGGcggttctgttctgttctgctcTCCCTCCGTTTCCCTTCCCTTTTCTGTACCCTGGGCTGGAACTGTTGACTGCAGAGCCCTAAGGGATGGGGGGGATGTCTGTCTGCCGATTTCTGATGATCTAGTCAAATGGACgacaagttgttgttttttcaaagagGAACGCTGCTGCTAAAGTGTGGATATGAAGTTCAATTTGAGCCGTTAATGAAAACTGCTTGAATGTAAAGACTTTGAGTTTCCAATGGCCTTCAATGCTCAGTTCACTGATTTTGCAAATCAACTGCAAAAGAACAGCATCCCTGACCGGCAGGGAGTCGAGGACAGTATTTTATATCTGGTAgccatgtttgtttattattttccttcccaAACAAGTGTTTCATGTTAACTCTCAGACTAGTCAAGATGGAGCTTTCTGTGTTACTGACCTTCTCTGTAGCTGAAGGATCCTGCTTACAAGCCTGCTGTGTGGCCTCTGACCGAACGCTATCTGTTTGTATGCAAAAcaatcggggggggggggggctcctgcaaatcctgtttttttttttttgttctgtttaaatgcACTTGGTCGTTCAAAGATAAACAATGTAACTGCTTTAAAGAGGTGAAAAGGGCATTCCAGCGTCTTGTGTTTGGACCTGTTAGGGATGGCTTTCTCTAAGGTATgttttgcaataataaaaaaa

Function

GO: NA

KEGG:

id description
K11452 CBX4, PC2; E3 SUMO-protein ligase CBX4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013394 True 3492 mRNA 0.56 5 30256283 30263941

Neighbor

gene id symbol gene type direction distance location
AMCG00013398 NA coding upstream 39259 30208073 ~ 30217024 (+)
AMCG00013397 NA coding upstream 62120 30186840 ~ 30194163 (+)
AMCG00013387 NA coding upstream 88465 30165054 ~ 30167818 (+)
AMCG00013377 NA coding upstream 194730 30046238 ~ 30061553 (+)
AMCG00013380 NA coding upstream 210783 30033411 ~ 30045500 (+)
AMCG00013395 NA coding downstream 15250 30279191 ~ 30283556 (+)
AMCG00013400 LOC108248236 coding downstream 38879 30302820 ~ 30310791 (+)
AMCG00013402 NA coding downstream 47781 30311722 ~ 30316419 (+)
AMCG00013401 NA coding downstream 81380 30345321 ~ 30351835 (+)
AMCG00013406 rab11fip4a,LOC107654480,LOC108274243,LOC106564646,LOC107688103 coding downstream 101931 30365872 ~ 30390476 (+)
G43895 NA non-coding upstream 809585 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1053562 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1078017 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1097790 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 1104949 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 191731 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 470595 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 472868 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 508440 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 510241 30774182 ~ 30774548 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 27262 30218910 ~ 30229021 (+)
AMCG00013388 NA other upstream 166166 30083644 ~ 30090117 (+)
AMCG00013382 NA other upstream 181535 30063380 ~ 30074748 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 327586 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 589232 29640623 ~ 29667051 (+)
AMCG00013399 NA other downstream 75861 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 161066 30425007 ~ 30430649 (+)
AMCG00013416 alyref,LOC106606979 other downstream 226886 30490827 ~ 30496613 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 299299 30563240 ~ 30568219 (+)
G44325 NA other downstream 512910 30776851 ~ 30777169 (+)

Expression


Co-expression Network