AMCG00013397


Basic Information

Item Value
gene id AMCG00013397
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30186840 ~ 30194163 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013397
TGTAGTTCTGCGCTGCACTTCCGTGTTGTTACTCGCTGGAGGCCTGCAGGGACCAGGCTGGGCGCCTGGCATGTGAGCCGCAGACTCACTCGCCTTTGGACGGACAGCTGTCGCCTGTGAACTGGACAGAATTACAGCTTTATTTACTGgCCCTGTGTTGGACTGGGACAGCTCTACCCCCccactctctgtgtctcagtgcagaTGTCTTTCAGGCAACAGGGGGACCACCCGGGAGAGGTCACGGGCCGCCCCCCAGTGTCCTGCGCTCCTGGTGTCCCCGTGCTGAGGCTGTGCACACTGGGCCTGGCTGTGCTGGCATGTGCCATGTGCGTGTTCGTGGGCTCCGTGTCCGATCGCGCAGTGACCACCCGCTTCCTTGCCACCCAACCCCCAGCAGCTCGCTTGGGCAGGGAGATGGCCTCCCCAGGGAGTGGGGATAAAGTGCCGTCCCCTGCGCAGGGCGTAGAGCTGGGGTCCCCACAGGGTAGTACAGGGAGCAGGGGCAACAGCACTGACCCCGCCCCGCCGACCCCAAGCCATCAGCCCCCGCCTGCTCCCCAGTGTGATGCCCCTCCAGAGAGCCGGTTCGACTGTGCCCCCGACCAAGCGCTGGGCCGGGGAGAGTGCGAAGCCAGGGGCTGCTGCTACGTCCCCCTGCCCCGGGGCCTCCAGGGAGGGCCGCCCTGGTGCTTCTACCCACCCTCCTATCCTGGGTATCACATGGGTCCCCTCACCCCCACCCAGAGGGGCCAGGCGGCCAACCTGACCCGTGCCGCCCCCACTCACCTTCCCCAGGACATCAGCACCCTGCGCCTGGAGGTCACCGCCGAGACCCAGGGCCGCCTGCACCTCACTCTGAAGGACCCCACGTCTGCCCGGTATGAGGTGCCCCTGGACGTGCCGAGGACGGGAGGTCAGGCACAATCTCCGCTGTACGATGTCCACTTCCTGCCGGACCCCTTCGCCATCGTGGTGCAGCGCAGGTCCAACGGTCGAGtcctgcTGAACACCTCCGTGGCTCCCCTGCTGTTTGCTGACCAGTTCCTGCAGCTGTCCACCTCCCTGCCCTCCCCCCTGCTCGATGCCAACCTGTACGGGTCTCACCCTTTCTACCTGGTGCAGGAGGGGGACGGACTGGCACATGGGGTGTTCCTGCTCAACAGCAACGCCATGGTGGTGGAGCTGCAGCCCGCCCCGGCCCTGACGTGGCGTGCTCTGGGGGGGGTGTTGGACCTGTACGTGTTCCTGGGCCCCGACCCCCAGAGTGTGGTGAGGCAGTACCAGGAGgATGTCCAGTGGAATGACTTGGACTACGCTGACCTTGGGAGGGACTTCACCTTTGACCCCCAGAGGTTTGGAGACCTGCCTGCAATGGTCAGGGAGCTCCACCAGGGGGGGCTGAAGTACGTGCTGATCCTGGTGTGGCCAGGCCCCACAGCTTTCCCGGACTTCACGAACCCGGAGACCCAGCGCTGGTGGCTCGACAGCATCCAGGACTTCCACCGCAGTGTCCCCTTCGACGGGCTGTGGAttgacaTGAACGAGCCGGCCAGCTTCGTGCAGGGCTCCCTCCAGGGGTGTCCGGACAGTGACCTTGAGACCCCCCCCTACATGCCAGgtgtgGTGGGGAGGGTGCTGAGCTCGGGGACGTTGTGGTTGGGCCGGTGGGCGGCGCACTGGACCGGAGATGTTCAGAGCAGTTGGGAGCACCTGAGGCTCTCCGTGCCCGccaTGCTGTTGTTCGGGCTGTACGGGGTGCCCCTGGTGGGGGCGGACGTGTGCGGGTTCGAAGGCGATGCCTCGGAGGAGCTGTGTGTGCGCTGGACCCAGCTGGGCGCCTTCTACCccttcatgaggaatcacaatGACCGGCCCAACAAGCCCCAGGAGCCCTATGTGTTCGGTCGCGAGGCTCAGGCGGCCATGCGGAGTTCCCCTCTGACCCCAGCAGTCGGACAGTGGACCGGCAGTTCCTGTGGGGGGGAGCCGGCCCTGACCACCTCTCGGGCGCGCAGCAACCCCTTCCACCTGACTGTGGGGCTGAGCGAGGGCGGCTGGGCGCGGGGCGAGCTGTTCTGGGACGACGGGGACAGTCTGGACAGCCTGGAGACTGGGGACTACTCGCACATCTTGTTTCTGGCTGGAGAgGCCCAGCTGGTGAGCGAGCTGCTGCGTGTCACTGATGCTCTCGACGGGCTGTTGCTGGGGGGGGTGCGGGTGTTCGGGGTGTCCTCTCCCCCCCGCCAGGTCTGGGCCAACGGGCAGCTGGTGAGAGACTTCTCCTACCGCACAGACACCCGGATGCTGACCGTGCCCGGCCTGGCTCTGCCTATGTGGGAGGTGTTCACCGTGCGCTGGGCTCTGTGATGAACAGCTGGGCAGTCGGAGGAGATGCTGTCTGTGGGCGGTTTATAGAGACCACCCTGCCCAGTGTCTCCCGGTCACCCAGTGACTGTCCGTCTCCCACAGTGTGTGTCCGTCTCCCAGTCTCTCAGTCACCCCCTGTGTCCTCGGTCCTCCTCTCCCAGCGCCCCACTGGGGAGGACTGTCTTTCGGGGCTGCTGTgatgtttgtaatatttttattcagattGCACTATTtgctgtgtgtgcttttttgtttatgtaaacTGAAAGATGTCTATTTTGGttactgcaataaaaaataatacaatgaggAAA

Function

GO:

id name namespace
GO:0044093 positive regulation of molecular function biological_process
GO:0043085 positive regulation of catalytic activity biological_process

KEGG:

id description
ko04625 C-type lectin receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013397 True 2684 mRNA 0.64 17 30186840 30194163

Neighbor

gene id symbol gene type direction distance location
AMCG00013387 NA coding upstream 19022 30165054 ~ 30167818 (+)
AMCG00013377 NA coding upstream 125287 30046238 ~ 30061553 (+)
AMCG00013380 NA coding upstream 141340 30033411 ~ 30045500 (+)
AMCG00013381 LOC106564907 coding upstream 162586 30016223 ~ 30024254 (+)
AMCG00013378 NA coding upstream 171376 30011468 ~ 30015464 (+)
AMCG00013398 NA coding downstream 13910 30208073 ~ 30217024 (+)
AMCG00013394 NA coding downstream 62120 30256283 ~ 30263941 (+)
AMCG00013395 NA coding downstream 85028 30279191 ~ 30283556 (+)
AMCG00013400 LOC108248236 coding downstream 108657 30302820 ~ 30310791 (+)
AMCG00013402 NA coding downstream 117559 30311722 ~ 30316419 (+)
G43895 NA non-coding upstream 740142 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 984119 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1008574 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1028347 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 1035506 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 261509 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 540373 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 542646 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 578218 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 580019 30774182 ~ 30774548 (+)
AMCG00013388 NA other upstream 96723 30083644 ~ 30090117 (+)
AMCG00013382 NA other upstream 112092 30063380 ~ 30074748 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 258143 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 519789 29640623 ~ 29667051 (+)
G43802 NA other upstream 1082263 29104289 ~ 29104577 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 24747 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 145639 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 230844 30425007 ~ 30430649 (+)
AMCG00013416 alyref,LOC106606979 other downstream 296664 30490827 ~ 30496613 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 369077 30563240 ~ 30568219 (+)

Expression


Co-expression Network