AMCG00013398


Basic Information

Item Value
gene id AMCG00013398
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30208073 ~ 30217024 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013398
ATGTCGGGCAGCGTGAGCAAGAGTAcagagctgcaggagctggacGAGGATGAACTGTGGGGCCTCATCGAGGACCACCGACACCCCCTGTCCTTGGGGGTGCAGCCCTGCCTGCTCATCCCCTTCCTGCGCCAGGCCAGGATGCTGGACGAGCTGGACGAGGACGAGATCCTGCACAGCCTGCAGCTCACCCACCGCTGCATGAAGAccagccGCATGCTGGACCTTCTGCGGACCCGAGGCCGAGACGGAGCCATGGCCTTTCTGGACAGCCTGATGATCCACTACCCCAAACTGTACAGCCAGGTGACCGGCCTGACGCCCAGCTCTCACAACACCGGCTTCAGCGGCCTGATGAAGACCTCCGAGCTGACAGAGTACCTGGTGCGTGCCATCACCGGCATGCAGGAGCAGATGTGCGCGGCGCGGGCGGAGGCAGGGGCACTGGAGGCACGCTGCTCGAAGCTGGAGGGGGAGCTGGCACAGGCGCAGCGCCGGAGCGAGGCACAGCGGGGCCTGGAGGCGGAGCATGCCCGACTGCGCCGGGAGGTGCAGAACTCTGTGGACACCCGCCAGCTCCGCGAAGAGATCATCACCCTGCGCCGCAAACTGCTGCAGGCTGAGACATTCAGTCCGGCCCGGGAGGATATCCTGGAGCGAGACCTGGAAGAGGCCCTGGATAGCCGGGGAGAGCTGGTGGATCAGATCAGCAGCCTTCAGGAGGAGTGTGAGAGACTGGTTAGCGAGAGAGAAGAGCTCCTGGAGGAGAAGGAGTCTCTGGCCCTGCAGGTGGAGAAACTGTCTCTGGACTGTGAAATGTACCAGCAGAAGACCACGATCGCCAAGAGCCTGTCAGAGAAGGATGCCCTCCGGCTGCAGCTGGTGGAACTGCAGGACAAGTTGTTCAGTCTGCGCACACATGTGGCCAAGAACAGCATGGAccgagaggaggagagggactGGACTGGAGCTGAGgaggGGGCTGAGACGTGCAACAGTTTCCGGTCTAATTGCGCTGAGCCGCCCAGTATGGTGTCGCTGCGCCGCAGAGAGGAGGACCTCCAGAGAAGCACCGAGCGCTCAGACTCCAAGCTGGGGATCTGGGACCCCCTGCCATCACCGCTGGACGGGGACGGGGACTTCGTCTTTGTGGCCCGGCGCAATGGCAGCCGTGTGATGACCATCTCCTTCCAGGGGGAGGCGCTGCTGAGCCAGCTACAGGTGCTGGGGGGGAACAACACAGGCGTGTTCGTGCACTGTGTCACCGAGGGGTCGGCTGCCCAGAGCGTGGGTATCAGCCCAGGGGCACAGATCCTGGAGGTGCAGTGCGAGAGGGAGCACCAGTCTTTCCGAGCCGTGCTGGAGGAGGCCACCCTGGAGGAGGCGCTGTGGGCCCTGCAGCAGGTCCGTGGCTTCTGCTGCCTCTCCCTGCGGTCCAATCAGGATGGCTATGAGAAGCTGCTGAGCGGGCTGCGCAGTGGGGAGTTGACCTCTGGCGACTCCTTCTACGTGCGTGTGAACGTGTCGCTCCCGGGGGACGGTGGCAGGGGGGGGCGGCTGGCCGTGCGCTGCGATGACGTTGTACACGTGATGGACACGCGCTACGGCTCCGACGGGACCTGGCGTGCCTGCCGCACCCACCACTACCAGCTCAAGGACCTGGAGTCGGGCACACTGCCCAACTACTACAGtgctgtgtccGGGAACATCACCCTGATGCCCTACACCCTGGTGAACCCAcaccgcccccccgccccccggccAGTCCTCCTGCTGCCCACAGTCTTCGGCCGACTGATGAACAACCGGCTGGCGGAGCTGCAGGGCTTCCAGAAGTGTGTACCAGAGGTGTTGAGTGACAGTGAATATGCACTGCGACTACAGAGGGGGGAGGTACTAGAGGACAAAGAGATCTACCCCATCGTCATTTTCACCGTGCTGTCTGACAGGAGCATCCGCAAGCTCCGCACCGTGGTGCCTGAGACCTGGGGGGACAGCGCTGCCCTACTGGCCCAGCTGCGCAGCACCGTGCTGGAGGAGCAAAGCAAGATCGTGTGGGTGGAGCAGGACCTGCTGCGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013398 True 2082 mRNA 0.64 15 30208073 30217024

Neighbor

gene id symbol gene type direction distance location
AMCG00013397 NA coding upstream 13910 30186840 ~ 30194163 (+)
AMCG00013387 NA coding upstream 40255 30165054 ~ 30167818 (+)
AMCG00013377 NA coding upstream 146520 30046238 ~ 30061553 (+)
AMCG00013380 NA coding upstream 162573 30033411 ~ 30045500 (+)
AMCG00013381 LOC106564907 coding upstream 183819 30016223 ~ 30024254 (+)
AMCG00013394 NA coding downstream 39259 30256283 ~ 30263941 (+)
AMCG00013395 NA coding downstream 62167 30279191 ~ 30283556 (+)
AMCG00013400 LOC108248236 coding downstream 85796 30302820 ~ 30310791 (+)
AMCG00013402 NA coding downstream 94698 30311722 ~ 30316419 (+)
AMCG00013401 NA coding downstream 128297 30345321 ~ 30351835 (+)
G43895 NA non-coding upstream 761375 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1005352 29179098 ~ 29202721 (+)
G43853 NA non-coding upstream 1029807 29177051 ~ 29178266 (+)
G43799 NA non-coding upstream 1049580 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 1056739 29149978 ~ 29151334 (+)
G44182 NA non-coding downstream 238648 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 517512 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 519785 30736809 ~ 30737487 (+)
G44322 NA non-coding downstream 555357 30772381 ~ 30774068 (+)
G44323 NA non-coding downstream 557158 30774182 ~ 30774548 (+)
AMCG00013388 NA other upstream 117956 30083644 ~ 30090117 (+)
AMCG00013382 NA other upstream 133325 30063380 ~ 30074748 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other upstream 279376 29885762 ~ 29928697 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other upstream 541022 29640623 ~ 29667051 (+)
G43802 NA other upstream 1103496 29104289 ~ 29104577 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 1886 30218910 ~ 30229021 (+)
AMCG00013399 NA other downstream 122778 30339802 ~ 30344005 (+)
AMCG00013408 NA other downstream 207983 30425007 ~ 30430649 (+)
AMCG00013416 alyref,LOC106606979 other downstream 273803 30490827 ~ 30496613 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other downstream 346216 30563240 ~ 30568219 (+)

Expression


Co-expression Network